| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nther_0115 |
|---|
| Symbol | |
|---|
| ID | 6314657 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Natranaerobius thermophilus JW/NM-WN-LF |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010718 |
|---|
| Strand | + |
|---|
| Start bp | 132033 |
|---|
| End bp | 133127 |
|---|
| Gene Length | 1095 bp |
|---|
| Protein Length | 364 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 642642488 |
|---|
| Product | Shikimate/quinate 5-dehydrogenase |
|---|
| Protein accession | YP_001916302 |
|---|
| Protein GI | 188584757 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5322] Predicted dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.000323099 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.00167749 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAAT TTGCATTCAT AATCCATCCC ATTTATCATA GTGATATTAT TAAAAAATTT
CCTTTTTTAA AAGCTTTACC AGAAAATATT TTAGAAAAAA CTTTTGGTCG TTTACCTCCC
TTCAAAGTTT CGAATATTGA AGGTGTAGAA AGTCCTCATA ATCAAATTGA AGGTTGTTTT
GTCGCGTGTC CACTTTCAAG TAATCAGATT TTGAACTTAC CCCAAGATTA TGTGATAAAA
AAGATCATTA AAGCTGGTAA AAAGGCTGAA GAACTTGGAG CTCAAGTGGT TGGTCTAGGA
GCATTGACAT CTGTTGTCGG AGATGCAGGG GTAACAGTGG CAAAAAACTT GAATATTCCA
GTGACTACAG GGAATAGTTA TACTGTGGCG ACAGCAATAG AAGGCGTTAA AAGTGCTTGT
CAGATGATGG ACTTTGACCA CAGTGAAGCA CATGTAGCTG TTCTTGGTGC CAGTGGGTCT
ATTGGAAAAG TGATTGCTAA GAAATTTGCC CGTGAATCCC GTTGGCTAAC ATTACTGGGA
AGGGATAAAG ACAAACTTGA GACTGTTTCA AAAGAGATTT ACAATGAATC TGGTATGGCC
GCAAAAGTTA CCAACCAAAT TAAGAAAAAT ATTTCGGAAG CTGACATAGT TTTTGCAGTC
ACAGGAGCTG CTGATGCTGT AATTTCTGGT GAAGAGTTAA AACCAGGAGC TATAGTTTGT
GATGTTGCCC GACCTAGAGA TGTTTCCTGG AGAGTTGCTC AAAGTCGCGA TGATGTTTTA
GTAATTGAAG GTGGAATTGT AGAAATCCCT GGTGATGTAG AATTCAATTT TAACTTTGGT
TTCCCACCTA AAACGGCGTA CGCCTGTATG GCCGAAACCA TGATTTTAGC CCTTGAGAAA
AAATATGAAA GCTTTAGTTT AGGCAGAGAC TTAAGTTTAG ATAAAGTAGA ACAAATTAGT
AGATTGGCTG AAAAACACAA TTTTAGGCTT GCAGGTTTTA GAAGTTTCGA AAAAGCAGTG
AGTAAAGAAA CTGTAGATCA AATTAAACAA AATGCTATGC GAAAAAGAAT AAAGTTTTCA
ACTTCAAAAG TTTGA
|
|---|
| Protein sequence | MDKFAFIIHP IYHSDIIKKF PFLKALPENI LEKTFGRLPP FKVSNIEGVE SPHNQIEGCF
VACPLSSNQI LNLPQDYVIK KIIKAGKKAE ELGAQVVGLG ALTSVVGDAG VTVAKNLNIP
VTTGNSYTVA TAIEGVKSAC QMMDFDHSEA HVAVLGASGS IGKVIAKKFA RESRWLTLLG
RDKDKLETVS KEIYNESGMA AKVTNQIKKN ISEADIVFAV TGAADAVISG EELKPGAIVC
DVARPRDVSW RVAQSRDDVL VIEGGIVEIP GDVEFNFNFG FPPKTAYACM AETMILALEK
KYESFSLGRD LSLDKVEQIS RLAEKHNFRL AGFRSFEKAV SKETVDQIKQ NAMRKRIKFS
TSKV
|
|---|
| |