| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_2250 |
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| Symbol | |
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| ID | 4597796 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nocardioides sp. JS614 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008699 |
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| Strand | - |
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| Start bp | 2400492 |
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| End bp | 2406422 |
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| Gene Length | 5931 bp |
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| Protein Length | 1976 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 639776849 |
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| Product | DNA primase catalytic core |
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| Protein accession | YP_923442 |
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| Protein GI | 119716477 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0358] DNA primase (bacterial type) |
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| TIGRFAM ID | [TIGR01391] DNA primase, catalytic core
[TIGR02686] conjugative relaxase domain, TrwC/TraI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCTCC ACAAGCTGAC GGCGGGGTCG GGGTACGACT ACCTGACCCG CCAGGTCGCA
GCGATGGACG CCACGGACAA GGGCCACACC GGCCTCGCGA GCTACTACAC CGAGAAGGGC
GAGACTCCCG GCGTGTGGGT CGGCTCCGGC ATGGAGGGAC TCGAAGGGCT CGACGCCGGC
GACATCGTCA CCGCTGACCA CATGCAGAGC CTGTTCGGCT CCGGTCACCA CCCGCTGGCC
ACCCAGCGGA CCAAGGACCT GGACCTACGC ATCGGCCGCG ACGGCGTCGA CCGGCCGACC
TACGCGGACT ACAAGACGGC CCGCCAGCTC GGCACGCCGT ACAAGGTCTA CGAGAACGAC
ATCAGCCCGT TCCGGATCGA GGTCGCCAAG CGCATCGCGG CCCTCAACGA GGCCGCCGGC
CTGCCGGGTG ACTGGCCGGT CCCCGCGGCC GACCGGGCCA AGGTCCGCAC CGAGGTCGGC
ACCGAGTTCT TCCGTGCTGA GCACGGCCGT GAACCCGCCG ACGCACGCGA GCTGGCCGCC
GCGATCGCCA AGCACTCCCG ACCGAAGACC AACGCGGTGG CCGGCTACGA CCTGACCTTC
TCCCCGGTCA AGAGCGTCTC GGTGCTGTGG GCGATCTCCG ACCCGAAGAC CGCCGCGGTG
ATCGAGCGGG CCCACCAGGC GGCGATCAAG GACGCGCTGG GCTTCATCGA ATCCAAGGCA
CTGTTCACCC GCCGAGGCAC CAACGGCGTC CGCCAGGTTG ACGTCCGCGG CCTGGTCGCC
ACGGCGTTCA CCCACCGCGA CTCCCGCGCG GGAGACCCTG ACTTGCATAC GCACGTCGCC
GTGGCGAACA AGGTCCAGAC GCTCGACGGC AAGTGGCTGG CCATCGATGG CCGGCCGCTG
CACAAGGCGG TGGTCTCGGC CTCGGAGACC TACAACACCG CGCTCGAGCG GCACCTGGTC
GACGCCCTCG GCGTGCGGTT CGAGGAGCGG CCGAACGAGG ACGCCCGCAA GCGGCCGGTG
CGCGAGATCG TCGGCGTCGA CCCCGAGCTG AACCGCCGCT TCTCTAAGCG CCGCGCCAGC
GTCGAGGACC GCCGCAAGGT CCTCGCGGCC GCGTTCCAGG CCACCCACGG CCGCCCGCCG
ACGCCGGTGG AGACCATCCA GCTGTCCCAG CAGGCGACGC TGGAGACCCG CGAGGCCAAG
CACGAGCCGC GCTCGCTGGC CGAGCAGCGC GAGACCTGGA GCCGTGAGGC CATCGAGGTG
CTGGGCACCC CTCAGCGGGT CGAGCATATG GTCCACGGCG CACTGAACCC GAAGGGCGCA
GCGCGGTCGC TGGCCGACTC GGCCTGGTTC GCCAAGACGA CCGACCGGAT CGTGGCGACG
ATGGAGGGAG CTCGGAGCAC CTGGCAGTTC TGGCACGTCT ACGCCGAGGC CCAGAGGCAG
GTCCGGGGCG CCAACGTGCC CACCAACCAG GTCCCCCACG TCGTCGACCT GCTCGTAAGC
GAGGTCCTCG ACGGCCGCTC GGTGAGCATG GCCCGCGCCT GGGACGCCAT CAGCGAACCG
GTCGAGCTGC GGCGCGCGGA CGGGACCTCG GTCTACACCC AGAGCGGCGC CGAGCTGTTC
ACCTCGGGCA AGGTACTCGC CGCCGAGCAG CGCCTGGTCG AGGTCGCCGG CCGGCACGAC
GGGTACGCCG TCACGACCGA CTCGGTCGAC CTGGCGCTGC TCGAGTCGAC CGCCAACGGC
ATCACCCTCA ACGCCGGACA GGCAACGCTG GTCCGCGAGA TGGCCACCTC CAGCGCCCGG
CTACAGCTGG CGATCGCGCC CGCCGGATCC GGCAAGACCA CCGCGATGCG AGCCCTGGCC
AGCGCCTGGG CTGATGGCGG CGGCACCATC ATCGGCCTGG CTCCCTCAGC AGCGGCCGCG
GACGCGCTGC GCTCCCAAAT CGACACCCAG ACCGACACCC TGGCCAAGCT GACCCACTCG
CTCGAGCAGG CCCGCGAGTC CGGCGCCGCG ATGCCCGCCT GGGTCGCCCG CATCGACTCC
TCCACCCTCG TGGTCATCGA CGAGGCCGGG ATGGCCGACA CCCTCTCGCT GGACGCAGCG
GTCTCCTACA TCCTCGAGCG CGGCGGCAGC GTCCGACTGA TCGGCGACGA CCAGCAGCTC
TCCGCGATCG GCGCCGGCGG CGTGCTGCGC GACATCCGCG CCACCCACGG GGCACTGCAG
CTGACCGAGC TCGTCCGGTT CAAGGATCCC GCCGAGGGCG CCGCCTCGCT CGCGCTGCGC
GAAGGCAAGC CCGAGTCGCT CGGCTTCTAC CTCGACCGCG ACCGCGTCCA CGTAGGCGAC
CTGGCCACCA TGACCGAGGA CGTCTTCGCG GCCTGGCAGG CCGACCGTGC CGCCGGCCTG
GACTCGATCA TGCTCGCCCC CACCCGCGAC CTGGTCAGCG AGCTGAACCA GCAGGCCCGC
GCCCACCGGC TCGAAGGAAT CGAGCCGGCC GACGTCGCCG CCAGCGGACC GGTCCGCCGG
CTCGCCGACG GCAACGAGGC CTCGATCGGC GAACTGATCA TCACCCGCGA GAACGACCGT
CGCCTGCGTA CTTCGGCCAC CGACTGGGTG AAGAACGGCG ACCGCTGGAA CGTGCTGGAG
ATCCACGACG ACGGCGACCT GACCGTCCAG CACACCCAGC ACGGCCGCAC CGTGCGGCTG
CCCGCTGACT ACGTCGCCCG ATCCTCCGAG CTCGGCTACG CGTGCACCGT GCACACCGCC
CAGGGCGTCA CCGCCGACAC GATGCACGGC CTGGCCACCG GCAGCGAGTC GCGCCAGCAG
CTCTACACGA TGATGACCCG CGGCGTGCAC GCGAACCACG TCTACCTCGA GGTCGTCGGC
GACGGCGACC CGCACTCGGT GATCCACCCG ACGCTGGTCC GGCCGCTCAC GCCGACCGAC
ATCCTCGAGT CGATGCTGGC GCGCGACAAC ATGCAGCGGT CCGCGACCAG CCTGCTGCGC
GAGCAGGCCG ATCCGGCCAC CCGGCTCGGC GAGGCGGCAC AGCGCTACCT CGACAGCCTC
TACGTCGCCG CGGAGGACTT CCTGCGCCAT GACGACGTCG GCCAGGACGC CAACGGCGCC
CCGACCAACG TGGTCGACGC CCTGGACAAC GCGGTCGAAA CGCTCGTCCC CGGGCTCTCG
GAGGAGGCCG CCTGGCCAAC CTTGCGTGCC CATCTGCTGC TGCTCGGCGC GGCCGGCCAG
AACCCCGTCG ACGCGCTCCG GGCGGCCGCC GGCGACCGGG AGCTGGAGAC CGCGCACGAC
CGCGCCGCGG TCCTCGACTG GCGCCTGGAC GCCTCCGGCT TGCGCAACGC CGGCGCAGGG
CCGCTGCCGT GGATGCCCGC GGTCCCGGCC CGCCTGGCTA AGGACCCGCA CTGGGGCGCC
TACCTCTCCC AGCGCGCTCA CCTGGTCGAG CAGCTCGCCG ACCAGGTCCG AACGCGGGCG
ACCGACCAGG CCGCACTACC GGCGTGGGCA CAGAACGGCC TCCGGCCCGA GGCCGCCACG
GTCGCCAACG TCGAGGTCTG GCGGGCCGCC ATGCAGGTCC TGGTCGACGA CCGGCGACCG
ACCGGTGCAC CGCAGCTGCA GAAGGCCTCC GCGACCTGGC AGCGACGGCT CAACCGCGCC
GTCACCGGCG ACCACACCCC GGCGCTCAAG GAATGGCGCC AGCTGCTCTA CTCGCTCGCC
CCGCAGGTCC GCGACGACGA GTTCACCCCG CTGCTCGCCG AGCGACTCGC CGCGATGTCG
CGCGCCGGCG TCACCGCCCA CGAGCTGCTG CGCACCGCCA CCGCGGCCGA CCACCCGGCC
GGGCCGCTGC CCGACGAGCA CGCCGCGGCG GCCGTGTGGT GGCGCATGGC CCGTCAGCTC
ACCCCGGCCG TTGCCTCCCA GATCGGCGAC GGTTCCCACG GTGAGAGCGT CACCACCGAG
TGGACCCCGC GGCTCGCGGA TCTGTTCGGT CCCGAGCGCG CCGCGAGCAT CCAGGCCAGC
ACCTGGTGGC CCGCGCTCGT CGCGAACGTG GACCACGGCA TGCAGCGCGG CTGGCAGGCC
GAGGCTCTGC TGGGTGCCGG GCGGGCGATG CCGAGCGACG GCTGGGAGGG CGTCGACGAG
TGCCAGGCGC TGGTCTGGCG GACCTCGATC GCGCTGGAGA CCGCTCCCGA CGAGCACGCG
CACGAGTACC ACTTCGACGA GCCGCCCGCA GACCTGTGGG ACGGGATCGA GCCGGACCCC
GCGACGCTCG TCGACCACGC CACCGACCCC GACTGGGGCG ACTGGCCGCT CGCCGAGGAC
CCCGGCCCGT ACGACGAGCA CCTGGTCGAC GTCGACGAGA ACGCGGCCGA CGAGCACGTG
GTCGACGCCG TCGCTGGCGA CCTGGTCGAC GTCGACGAGG ACCAGTTCGT CGAGCCCGAC
CTGACGCTGG CCGCCTACAT CCGCGACCTC GGCGGCAGCC GACTGGAGCC CACCGACGCC
GACCTCCGGC TCATGTACCA GCGGGCTGAC GAGTGGCACT CCTCCCCCGT CTCGCGTGAG
CGCATGCTCG AGATCAACGA CATGGCACAG GCCTTCTTCG AGGCCCGGTT CACCGACTCG
TGGGGCCGCG ACTACCTCAC CGGACGGTTC GGCATCGACC TCGCCGGCGA CGAGCGGTTC
CGTCCCGGTC AGGCGCCAGC CGGGTGGACC AACCTGGTCG ACCACCTGCG CGGCCGCGGT
GTCAGTGACG CCGAGATGGT GGCCACCGGC GTCGCCATCG AGGCCAGCAC CGGTCGCCTC
ATCGACCGGT TCCGCGACCG GGTGATGTTC CCGGTGATCC ACCAGGGCGA AGTGCTCGGC
TTCGTCGGCC GCCGCCGGCC CGACCTCACC GACGCCGACA AGGGCGGCCC CAAGTACCTC
AACACAGCCG ACACCCCGCT GTTCCACAAG GGCGCCCAGC TATTCGGTGT CGTCGACGAG
CTGCTCGCCG AGGGTGCGGT CCCAGTGATC GTCGAGGGCC CGATCGACGC CGTGGCGGTC
ACGCTGGCCA GCGCCGGCCT CTACCTCGGC GTGGCGCCGC TCGGCACGTC GCTGACCGAC
GAGCAGGCCG CCCAGCTGGC TGCCGTCGGC CGCGACCCGA TCGTGGCCAC CGACGCCGAC
CTCGCTGGCC AGGTCGCGGC CGAGCGCGAC TTCTGGATGC TCACCCCGCA CGGCCTCGAC
CCCGGCTTCG CGCGGTTCCC CGACGGCCTC GACCCCGCCG ACCTGCTCGC CCAGCGCGGG
CCCGCTGCGC TCACTGCCGC GCTGGCCAGC GGCCAGCCCG CCTTCCGCTC GCTCGGTGAC
CAATTGCTCA CCGAGCGCCT GGACAACCTC GCCCCGGAGC AGGCACAGAT GGCCGCTATG
CGGGTCATCT CGGCACGTCC CAGCCGCGCC TGGGAGCCGG GCGCCAACCA GGTCCGGGCC
CGCCTGCAGC TCTCCCAGTT GCAGGCGCGA CGCGACCTGC GCGACGCGAT CAAGACCTGG
GATGCCGACC CGCGGAAGGC GGCACTGGCC GAGCTCCACA AGAGCAGCGA GGTTCGCGCA
CGGCTCTCGG CCGCGGCCGA GAAGACCCCG GCCGAGCGGT GGGCCCCACT GGCTCGCGAA
CTCGACCCGC GGCTGCTCGA GCAGGGCGAC TGGCCGGCCA CCGCCGCGAT GCTGCAGCAG
GCCCACGAGC AGGGTCACGA CGTCGGCGCC GCCACGCGCG GCCTGGTCGC TGAGAAGCCC
CTGGGCGACA GCCCGGCCCG TGACCTGCGC TACCGGATCG TGTCCCGCCT CGAGATCCCG
ATCGACACCG GCGAAGGCAC CCCGGCGCCG ACCCAGTCGC AGGGCGTGGC ACGAGATCGG
CAGGACGTGA ACCGTCCGCG GCCGCCCCGC CGCGGTACCC CACGCCGCTG A
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| Protein sequence | MSLHKLTAGS GYDYLTRQVA AMDATDKGHT GLASYYTEKG ETPGVWVGSG MEGLEGLDAG
DIVTADHMQS LFGSGHHPLA TQRTKDLDLR IGRDGVDRPT YADYKTARQL GTPYKVYEND
ISPFRIEVAK RIAALNEAAG LPGDWPVPAA DRAKVRTEVG TEFFRAEHGR EPADARELAA
AIAKHSRPKT NAVAGYDLTF SPVKSVSVLW AISDPKTAAV IERAHQAAIK DALGFIESKA
LFTRRGTNGV RQVDVRGLVA TAFTHRDSRA GDPDLHTHVA VANKVQTLDG KWLAIDGRPL
HKAVVSASET YNTALERHLV DALGVRFEER PNEDARKRPV REIVGVDPEL NRRFSKRRAS
VEDRRKVLAA AFQATHGRPP TPVETIQLSQ QATLETREAK HEPRSLAEQR ETWSREAIEV
LGTPQRVEHM VHGALNPKGA ARSLADSAWF AKTTDRIVAT MEGARSTWQF WHVYAEAQRQ
VRGANVPTNQ VPHVVDLLVS EVLDGRSVSM ARAWDAISEP VELRRADGTS VYTQSGAELF
TSGKVLAAEQ RLVEVAGRHD GYAVTTDSVD LALLESTANG ITLNAGQATL VREMATSSAR
LQLAIAPAGS GKTTAMRALA SAWADGGGTI IGLAPSAAAA DALRSQIDTQ TDTLAKLTHS
LEQARESGAA MPAWVARIDS STLVVIDEAG MADTLSLDAA VSYILERGGS VRLIGDDQQL
SAIGAGGVLR DIRATHGALQ LTELVRFKDP AEGAASLALR EGKPESLGFY LDRDRVHVGD
LATMTEDVFA AWQADRAAGL DSIMLAPTRD LVSELNQQAR AHRLEGIEPA DVAASGPVRR
LADGNEASIG ELIITRENDR RLRTSATDWV KNGDRWNVLE IHDDGDLTVQ HTQHGRTVRL
PADYVARSSE LGYACTVHTA QGVTADTMHG LATGSESRQQ LYTMMTRGVH ANHVYLEVVG
DGDPHSVIHP TLVRPLTPTD ILESMLARDN MQRSATSLLR EQADPATRLG EAAQRYLDSL
YVAAEDFLRH DDVGQDANGA PTNVVDALDN AVETLVPGLS EEAAWPTLRA HLLLLGAAGQ
NPVDALRAAA GDRELETAHD RAAVLDWRLD ASGLRNAGAG PLPWMPAVPA RLAKDPHWGA
YLSQRAHLVE QLADQVRTRA TDQAALPAWA QNGLRPEAAT VANVEVWRAA MQVLVDDRRP
TGAPQLQKAS ATWQRRLNRA VTGDHTPALK EWRQLLYSLA PQVRDDEFTP LLAERLAAMS
RAGVTAHELL RTATAADHPA GPLPDEHAAA AVWWRMARQL TPAVASQIGD GSHGESVTTE
WTPRLADLFG PERAASIQAS TWWPALVANV DHGMQRGWQA EALLGAGRAM PSDGWEGVDE
CQALVWRTSI ALETAPDEHA HEYHFDEPPA DLWDGIEPDP ATLVDHATDP DWGDWPLAED
PGPYDEHLVD VDENAADEHV VDAVAGDLVD VDEDQFVEPD LTLAAYIRDL GGSRLEPTDA
DLRLMYQRAD EWHSSPVSRE RMLEINDMAQ AFFEARFTDS WGRDYLTGRF GIDLAGDERF
RPGQAPAGWT NLVDHLRGRG VSDAEMVATG VAIEASTGRL IDRFRDRVMF PVIHQGEVLG
FVGRRRPDLT DADKGGPKYL NTADTPLFHK GAQLFGVVDE LLAEGAVPVI VEGPIDAVAV
TLASAGLYLG VAPLGTSLTD EQAAQLAAVG RDPIVATDAD LAGQVAAERD FWMLTPHGLD
PGFARFPDGL DPADLLAQRG PAALTAALAS GQPAFRSLGD QLLTERLDNL APEQAQMAAM
RVISARPSRA WEPGANQVRA RLQLSQLQAR RDLRDAIKTW DADPRKAALA ELHKSSEVRA
RLSAAAEKTP AERWAPLARE LDPRLLEQGD WPATAAMLQQ AHEQGHDVGA ATRGLVAEKP
LGDSPARDLR YRIVSRLEIP IDTGEGTPAP TQSQGVARDR QDVNRPRPPR RGTPRR
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