| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_1576 |
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| Symbol | |
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| ID | 4595516 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nocardioides sp. JS614 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008699 |
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| Strand | + |
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| Start bp | 1669690 |
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| End bp | 1671051 |
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| Gene Length | 1362 bp |
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| Protein Length | 453 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 639776175 |
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| Product | Type IV secretory pathway VirD4 components-like |
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| Protein accession | YP_922777 |
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| Protein GI | 119715812 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.540203 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCATCG AGGCGACAGA CCTCGGCTGG CGGCTGGGGC GATCGAAGAT CCCCGCTGGC
GTCGAAGTGT GGGTGCCTTT CGACCGCACC GTCGGCGTGT ACGGGCCGCA GGGGTCCGGC
AAGACCCTGG ACCTGCTCAC GCCGGCCCTA CTCACGGCCC CAGGTGCCGC GCTGGTCACG
CTCACCAAGC CGGAGGATCT CTACCTCACC ATCGGCGCGC GCGGGATGCG CGGCGCCGTA
CACGTTCTCG ACCCCTTCGA CCTCGCGCCA GGGACGCCCG GGTTGGTATG GGATCCGGTG
GACGGCTGCG CGGACTCGAT GACAGCTGAG CGCCGGGCGA AGGCGTTCAC GGCGGGGACC
GTGGGCGGCG CGGTGACCCG CGGCGCAGGA GACGAGGCGG CACGGTTCTA CGCGGCAGAG
GCGGCGAAGG TCCTCCAGGC GTACTTCCAC GCCGCCGCGC TCGAGGGAGC GTCGCTGGAC
GACGTACTGA TGTGGATCGC GGACCCGCAC AACGCGACCC AGCCGGAGGA GATCCTCCGC
ACGCATCCGG GCTCGGCACC GTTCTGGGAT GGCTTGCTGA GGGGCGCCCT TCACGGTGAT
CACCGGACGG CGGGGAACAC GATCACGACC GTCCAGCAGG CGATGGCGCT GTTCTTCCAG
GAGTCGATCC GGCGGCGATG CGTGCCCAGC TCGAGTCGGC CGGCCACCGA CCTCAAGCAG
GTGATAGCCG ACGGCGGCAC CGTGTACCTG CTCGGTCGGG AGGATCCGTA CGCGTCCGCC
TCGCCGCTGA TGACCGCGAT CGCCGAGCAC GTCCTCGACA CCGCGCTGGG CATGGCCATG
GCGTCGCCGT ACGGCCGAAT TTGCCCGCCG TTCCTGGCCT GCCTGGACGA ACTGCCCTCG
ACCACGCCGC TACCGACGCT GCGGACGCGG ATGGCCAACG AGCGGGCGCT CGGCCTGTCG
TTCGTCTACG CCGCACAGAC CTGGCGCCAG CTCGTCATCT GCTACGGCGA GGACGAAGCC
CGAGCGATGT TCGGCCTGAC GAACAACATC GTGATCTTCG GCGGCGGCAA AGACGGCGAG
TTCTACAAAG AGGTGTCCGA GCTGCTCGGC ACGGCGCGGG TGTCGCGCCG CAGCTACAAC
CTCCACCGAG GCGGCTGGGG CAGCAGCTTC TACGGCGACG ATGTACCGGT CCTCCGGCCG
GAGGAGATCC GGCAACTTCC CGATCGCCAC GCTCTGGTCG TCGCCGAGAA CGCACGACCG
TTCGTCGCCA AGCTGTCCCG GTGCATCGAC GGTCGTCAGG GAAAGGCGCT ACTCAGAGAG
CAGGCGGCCG CTCGGACGCA GGCTGCGGAG GCACGACGAT GA
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| Protein sequence | MTIEATDLGW RLGRSKIPAG VEVWVPFDRT VGVYGPQGSG KTLDLLTPAL LTAPGAALVT
LTKPEDLYLT IGARGMRGAV HVLDPFDLAP GTPGLVWDPV DGCADSMTAE RRAKAFTAGT
VGGAVTRGAG DEAARFYAAE AAKVLQAYFH AAALEGASLD DVLMWIADPH NATQPEEILR
THPGSAPFWD GLLRGALHGD HRTAGNTITT VQQAMALFFQ ESIRRRCVPS SSRPATDLKQ
VIADGGTVYL LGREDPYASA SPLMTAIAEH VLDTALGMAM ASPYGRICPP FLACLDELPS
TTPLPTLRTR MANERALGLS FVYAAQTWRQ LVICYGEDEA RAMFGLTNNI VIFGGGKDGE
FYKEVSELLG TARVSRRSYN LHRGGWGSSF YGDDVPVLRP EEIRQLPDRH ALVVAENARP
FVAKLSRCID GRQGKALLRE QAAARTQAAE ARR
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