Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Noc_1828 |
Symbol | |
ID | 3705268 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrosococcus oceani ATCC 19707 |
Kingdom | Bacteria |
Replicon accession | NC_007484 |
Strand | - |
Start bp | 2076393 |
End bp | 2077613 |
Gene Length | 1221 bp |
Protein Length | 406 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 637738309 |
Product | secretion protein HlyD |
Protein accession | YP_343826 |
Protein GI | 77165301 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTAAAT CTTTTTTCCA TGCTGGGGTT GTTGCCGCCA TTTTTCTTGG TTTAAATGGT TGCAATGATC CCACTCCCCA ACTTTCGGAA CCGCCGCCGC CAGAGGTCAC GGTTGCCCAC CCTATCCAAC GGGAGATCGT CGAATGGGAC TACTATACAG GGCGTACCGA AGCGGCTAAG ACCGTAGAAA TCCGCGCTCG GGTCAGTGGT TATCTTGATG AAATTGCTTT TGAGCCAGGC AAGATTGTTG AGAAAGGGGA TTTGCTGTTC GTCATTGATC AACGTCCTTA CCAGGCGGTG CTGGCCCAGG CCCGGGCGGG TTTGAAGCGG GCCCGGGCCC AGCTTACTTT GGCGATAACG GAACTTGAGC GCGCCGAGCA GTTGGTGGGA AGAAAACTGA TTGCCCGTGA GGAATACGAT CAACGGCTTG CCGAGCGGCA GGTTGCCCAA GCAGAAGTCA TGGAAATGCA GGCTGCCGTT GAATCTGCTC GCCTTGATCT TAACTTTACC GAGATCAGGG CGCCCATAGG GGGGCGTATT AGCCGGCAGT TGGTGGATGG GGGCAACTTG ATTATCGGGG GAGGCGAGGG TAATGCTACT TTGCTCGCCA TCTTGGTTTC CATTGATCCC ATTTATGTTT ATATCGATGC CGATGAACGG GCAGTGCTTA AGTATAGGCG CTTGCACCAA GAAGGTAGTC GGGTGAGTGC ACGCTATGCG CGAATTCTAG CCCAAGTGGG CCTTGCGACA GACAAAGACT TTCCTTTTCA AGGGATTATC GACTATGTTG CGCCCCGGGC AAACCCCTCT ACCGGCACTG TACGCGCTCG GATTGTCATC CCTAATCCGG ATGATCAGTT AAGCGGTGGT TTTTTCGCCC GGGTGCGAAT ACCTGGAAGT GGCCGCTATC GGGCCACATT GATTACGGAT CGGGCGATTA GTCAGGACCA GGGGCAAAAA TTCGTTTATG TGGTAAACGA TGAGAATAAG GTCGCCTACC GCCGGGTTGA GTTGGGTCCT ATCGTGGATG GTTTGCGCAT TGTTCGTGCT GGTCTGGAGC CGGAGGAGCG GATCATTATC AAAGGCGTCC AACGGGCCCG GGAAGGTATC GAAGTTAGCC CCCAGTTGGC ACCCATGACG GCCCCGGAGG CTTCTACCCA AACCAGCGCT AAGCCACTTA TTTTGGAGGC TGGCAAAGAA TTTTCTCCCG GCCAAGGTTA A
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Protein sequence | MIKSFFHAGV VAAIFLGLNG CNDPTPQLSE PPPPEVTVAH PIQREIVEWD YYTGRTEAAK TVEIRARVSG YLDEIAFEPG KIVEKGDLLF VIDQRPYQAV LAQARAGLKR ARAQLTLAIT ELERAEQLVG RKLIAREEYD QRLAERQVAQ AEVMEMQAAV ESARLDLNFT EIRAPIGGRI SRQLVDGGNL IIGGGEGNAT LLAILVSIDP IYVYIDADER AVLKYRRLHQ EGSRVSARYA RILAQVGLAT DKDFPFQGII DYVAPRANPS TGTVRARIVI PNPDDQLSGG FFARVRIPGS GRYRATLITD RAISQDQGQK FVYVVNDENK VAYRRVELGP IVDGLRIVRA GLEPEERIII KGVQRAREGI EVSPQLAPMT APEASTQTSA KPLILEAGKE FSPGQG
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