| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_4405 |
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| Symbol | |
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| ID | 4025265 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007960 |
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| Strand | - |
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| Start bp | 54437 |
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| End bp | 56089 |
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| Gene Length | 1653 bp |
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| Protein Length | 550 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637964913 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_571821 |
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| Protein GI | 92109534 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.164815 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAGAATC GCCAGATCAT CCTGGACATA GGCGACGGCT CGCGACCGCC TCCCCGAGGC
GATTTTCGTC GGGCGTCGCC ATGGGGTCCA ATTGCATTCT TCCGCGCAAG CAGCGTCAGG
GGCAGACTAT TGATGGACAA GTTTACGGAT GACCGTCCAT TCGAAGATGG ACATCTAACG
CGCCGCGCCC GAGCCGGAAG ATCGACCGCG AAACGGGTCG CGCTCATTGT GTTCGCGATA
AGCGCGCTCG CGGCAACATT GGGGATCGGC TATCGGCTCG GCCACACCAG TCAAGTGTTG
CCTGATTGGG TGCCGCCTCG CCTCGCAACG GCCCTCGGTA TTCAACCGGT CAAGCCCAGA
GCCACCGGTC CGGTCATTTA CTACCGCGAC CCCGACGGCA AGGCGCTCTA TTCCAAGGAC
GCCAGGATAA CGCCGGACAG GCGCCCGTAT GTCGCCGTCC ATGCCAGCGA AGATGTCAGC
TTCGACAATG CTCCGGAAAC TGCGGCGCCA GCCCAGGACG CCAATTCCGG AGCCAAGCGA
ATTCTCTTCT ACCGCAATCC GATGGGCCTT CCCGACACCT CCTCCGTCCC GAAAAAGGAT
TCGATGGGGA TGGACTACAT CGCCGTTTAT GCGGGCGATG AGGACGCCTC CACGATCCAG
ATTTCGCCGG CGAAATTGCA GCGCACCGGT GTGCGTTCCG AACCTGCCTC GCGCCGGGTC
GTGATACGAC CGATCCGCGC CCCCGGCACG ATCAAGCTCG ATGAGCGGCG CGTGGTCGTG
GTTTCACTGC GGGCGCAGGC CTTCATCGAA AGCGTCGCGA ACGTCACGAC AGGCGATCAT
GTCACCAAGG GACAACCCTT GTTCAAGCTT TATTCGCCGG ACGTCGCCTC CGCGAGCGCC
CAGTATTTAT CCATCATCAG AGACGATGGT CGAACAGCCA GCCTCGCGGG ACGCAAACAA
CTGGCCGAGG GCGCGCGGCA GCGGCTCGAG AACCTTGCGG TGCCTGCCGA CGTGATCGCC
GATATCGAGC GCACCAAGAC GGTGCCACTG ACCATTACAT GGGCAGCACC TCGCGATGGC
GTGGTTCTGG AAAGGACGGC GGTCGAGGGC ATGCGCGCAA TGCCGGGCGA CGTGCTGTTT
CGGATGGCCG ACACGTCCGT TATTTGGGTG CTCGCCGACG TCGCCGAACA GGATATCGAC
GCGGTGAGGG TTGGCGCGGC GGCAACCATC AAGCTGCGCA GCCTGCCGGG GCGGGAATTC
AAGGGATCGG TCGCCTTGAT CTATCCCCAG GTCAACACCG AAACCCGCAC CACCAAGGCA
CGTATCGAAC TTCCGAATCC CGACGGCGTG CTTCTTCCCG ATATGTTCGC CGACGTTGAA
ATCGCGTCCG GTGCGGAAAA GCCCGTGGTC GCGGTGCCCA ATGGTGCGGT GATTGATACG
GGTGCGCGGC AGATCGTCTT CATCGACAAA GGGGAAGGCC GTTTTGAACC TCGTGAAGTC
AAGGTCGGCA CGCACGGCGA GGACTACACT GAGATCCGCG AGGGCGTCGG CGAAGGCGAC
CTCGTCGTCG TTGCCGCCAA CTTCCTGATC GATGCCGAAA GCAACCTGAA ATCCGCCTTG
CAGGCATTTA CAGACGGGGA GAAGGCGAAA TGA
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| Protein sequence | MKNRQIILDI GDGSRPPPRG DFRRASPWGP IAFFRASSVR GRLLMDKFTD DRPFEDGHLT
RRARAGRSTA KRVALIVFAI SALAATLGIG YRLGHTSQVL PDWVPPRLAT ALGIQPVKPR
ATGPVIYYRD PDGKALYSKD ARITPDRRPY VAVHASEDVS FDNAPETAAP AQDANSGAKR
ILFYRNPMGL PDTSSVPKKD SMGMDYIAVY AGDEDASTIQ ISPAKLQRTG VRSEPASRRV
VIRPIRAPGT IKLDERRVVV VSLRAQAFIE SVANVTTGDH VTKGQPLFKL YSPDVASASA
QYLSIIRDDG RTASLAGRKQ LAEGARQRLE NLAVPADVIA DIERTKTVPL TITWAAPRDG
VVLERTAVEG MRAMPGDVLF RMADTSVIWV LADVAEQDID AVRVGAAATI KLRSLPGREF
KGSVALIYPQ VNTETRTTKA RIELPNPDGV LLPDMFADVE IASGAEKPVV AVPNGAVIDT
GARQIVFIDK GEGRFEPREV KVGTHGEDYT EIREGVGEGD LVVVAANFLI DAESNLKSAL
QAFTDGEKAK
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