Gene Nham_3580 details

Gene Information

• Locus tag: Nham_3580
• Symbol: rimM
• ID: 4030908
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrobacter hamburgensis X14
• Kingdom: Bacteria
• Replicon accession: NC_007964
• Strand: +
• Start bp: 3937832
• End bp: 3938353
• Gene Length: 522 bp
• Protein Length: 173 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 637971992
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_578769
• Protein GI: 92119040
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 0.264248
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACGGCGC GCGTCTGCGT GGCCCGGATC GGCGCCGCGC ATGGCCTGCG CGGCGAGGTG 
CGGCTGTGGA CCTTCACCGA AGACCCGATT GCGGTGACGC GATACGGCTC GCTCTCGACA 
AAGGATGGCG CACGCCAGTT TGAAGTAACG CACGCGCGCG AGGTCAAGGA CTACCTCGTC 
GCAACGCTCA CAGGCGTGAC CACGCGCGAG GAGGCCGAGC GGCTCAACGG CACCGACCTC 
TACGTCGCGC GCGACAAGCT TCCGGCGACA GACGAGGGCG AATTCTACCA CGCCGACCTG 
ATCGGTCTTG CCGCCGTCGA TGTGGCCGGC AAGCCGCTCG GAACCGTCGC CGCCATCCAC 
AATTTCGGCG CCGGCGACAT CATCGAGATC GCGCCCGCGC ACGGTCCGAC GCTGATGCTG 
CCGTTCACCG ATGCCGTGGT GCCGACCGTG GATATCGCCG GCGGACGCGT GGTGATCGAG 
ATGCCCGGCG AGATCGACGG CGATACGCCT GACCAGGCAT GA 

 

Protein sequence

MTARVCVARI GAAHGLRGEV RLWTFTEDPI AVTRYGSLST KDGARQFEVT HAREVKDYLV 
ATLTGVTTRE EAERLNGTDL YVARDKLPAT DEGEFYHADL IGLAAVDVAG KPLGTVAAIH 
NFGAGDIIEI APAHGPTLML PFTDAVVPTV DIAGGRVVIE MPGEIDGDTP DQA