Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ndas_1225 |
Symbol | |
ID | 9245075 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 |
Kingdom | Bacteria |
Replicon accession | NC_014210 |
Strand | + |
Start bp | 1526165 |
End bp | 1527058 |
Gene Length | 894 bp |
Protein Length | 297 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | |
Product | Type II secretion system F domain protein |
Protein accession | YP_003679170 |
Protein GI | 297560196 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.00467783 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGACTCCCA ACTTGGCCGC TGCTCTTGCG GGTGCCGCCA TCGGGCTGGC CCTGTGGGCA CTTTTCGCCG CCCGCTGGGC ACGCCCGACA CTCGCTGAAC GCTTGGCCGC TCCGCCTCCT CCCAGGCCTG TCATGGTCAC GGACCAGGAT GCCGGAGTAC TGATTCGCCT GGGAAAGATC GGTGTTCCGA TCATGGAAGG CTTCGGTATG CCAGGGCGCC GCACCCGGCG AAACTTGATG GTGTGCGAAC GCTCACCAGA GTCCTACCTC GCCGAGAAGT TCACTAGTCT GCTTCTGGGC TTGGCCTTGC CACCGTTGTT GGGGAGCATA TTTGCCTTGG CCGGAATCCG GCCGTCCGCG ACTGTCGCAG CGGTCGTGTG GGTGTTGTTC GTTCTTGGCA CCTGGTCCGC ACCCGATATG TCCCTGCGGG ATGAAGCGAA TAAGCGTCGG GAACAAATGC GCCGTGCCTT GGCAAGCTTT GCTGATCTGG TCGTAGTGTC TCTGGCCGGG GGAGCGGGCG TCAACGGTGC TCTCGCTGAC GCCGGAGCGG CGGGCAACGG ATGGGCCATG GCCCGTATCC GGGAGAGCCT GCGCCAGGCA ACGCTCATGC GCCAATCCCC TTGGACCGCG TTGCGCGACC TTGGTGAACG TTACGACACC CCAGAGTTTG CCGAACTGGC GGCCAGTCTC CAGCTTGCCG GTGCTGACGG TGCCCGCATT CGCAGTTCCC TGGCTGCCAA AGCTAAGACA CTGCGCACTC AGTTCCTTGC CGAAATGGAC GCCGAGGCTC AGTCCGCCAC AGAGCGGATG AGCCTGCCGG TGATCCTGCT TTTTGCCGGG TTCTTAGCTT TGCTGGGTTA TCCGGCAATG AGCAACATCA TGTTCAGCGC ATGA
|
Protein sequence | MTPNLAAALA GAAIGLALWA LFAARWARPT LAERLAAPPP PRPVMVTDQD AGVLIRLGKI GVPIMEGFGM PGRRTRRNLM VCERSPESYL AEKFTSLLLG LALPPLLGSI FALAGIRPSA TVAAVVWVLF VLGTWSAPDM SLRDEANKRR EQMRRALASF ADLVVVSLAG GAGVNGALAD AGAAGNGWAM ARIRESLRQA TLMRQSPWTA LRDLGERYDT PEFAELAASL QLAGADGARI RSSLAAKAKT LRTQFLAEMD AEAQSATERM SLPVILLFAG FLALLGYPAM SNIMFSA
|
| |