Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Msed_2003 |
Symbol | |
ID | 5103390 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Metallosphaera sedula DSM 5348 |
Kingdom | Archaea |
Replicon accession | NC_009440 |
Strand | - |
Start bp | 1936367 |
End bp | 1937320 |
Gene Length | 954 bp |
Protein Length | 317 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640507891 |
Product | homoserine dehydrogenase |
Protein accession | YP_001192067 |
Protein GI | 146304751 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0460] Homoserine dehydrogenase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGTCCA ATAGCTTACG GGTCCTCCTG GTAGGATATG GTAATGTGGG TAAGGCCCTC AGGAAGATGG TCAGGGAGAG GGCACCCTCA CTGGGTTTGA ACGTAAGGAT AGAGGGAATT GTCACCAGGA GAGGCATTAT GCTAGGAGAC TCGGAGGAGT TTAGAAAAAC CAAGGATGGA ACTCCCATTG ACGCCCTAAA TGAGGTGAGC CCTGACCTAG TGATTGACGT AAGTTCCGCC AATTACGAGA CAGGAGAGCC CTCCTTCTCC CTTTACATGG AGGCTTTATC AAGGGGTATT GCGGTGATCA CGGCGAACAA GGCTCCCCTT GCCCTTAAGT ACGCGGAGAT CGTGGCTCAA GCTAAAAAAC ATGGCGCCTT CCTTGGGTTT CAGGCAACAG TGATGAGCGG GACCCCCTCC ATAAACCTTC TTCGCCTGTT GAGGGGTTCA ACCATCCTGA AGATAAGGGG TATCCTGAAC GGTACCACGA ATTATATCCT CACTAGAATG GATCAGGGAC TTGAGTACTT TCAGGCCTTA AGGGAAGCTC AGGAAAAGGG ATACGCTGAG GCAAACCCGG AGCACGACGT GAATGGATTT GACGCTGCAG CTAAACTAAC TATCTTAACC AATTTCGCAA TGGGTAGAAA TATCTCGATC AGGGATGTCG ACTTTTCCGG AATAGCTAAC GTTACACTCT CAAGGATTGA AGAGGCTAAA CGTAGATCAA GAAAGCTCAA GTTAGTTGCT GTCTCGGAGG GTAAAACAAG TAAGGTTAGC CTGACCGAGG TATCTCCTGA GGATCCGCTG TATCATGTGG ACGGAGTAAT CAACACGCTA GACATTCACT CTGACATACA GGAAGTAGTT ATTACAGGAC CTGGGGCTGG TCCACAGAAC GCGGCCTTTG GTGTGTTCTC GGATATAGTA CTAATGAGCA ATGGTTTGAT TTGA
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Protein sequence | MKSNSLRVLL VGYGNVGKAL RKMVRERAPS LGLNVRIEGI VTRRGIMLGD SEEFRKTKDG TPIDALNEVS PDLVIDVSSA NYETGEPSFS LYMEALSRGI AVITANKAPL ALKYAEIVAQ AKKHGAFLGF QATVMSGTPS INLLRLLRGS TILKIRGILN GTTNYILTRM DQGLEYFQAL REAQEKGYAE ANPEHDVNGF DAAAKLTILT NFAMGRNISI RDVDFSGIAN VTLSRIEEAK RRSRKLKLVA VSEGKTSKVS LTEVSPEDPL YHVDGVINTL DIHSDIQEVV ITGPGAGPQN AAFGVFSDIV LMSNGLI
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