| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0593 |
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| Symbol | |
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| ID | 5105565 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 547223 |
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| End bp | 548098 |
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| Gene Length | 876 bp |
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| Protein Length | 291 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640506497 |
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| Product | MscS mechanosensitive ion channel |
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| Protein accession | YP_001190692 |
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| Protein GI | 146303376 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0668] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.340392 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.970909 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGTTCTA CTAGACCACT AATAAGAATC CTTGTTCTGC TAATAATAAT TGGAGCCTTA
GTTTACATTC TTCATGTTAT TTTATCAGCA TTCATCGCTT CTAATTCCAA ATTGGTGCCA
TATGTTAATG ATGTGCAGCT CGGATTGGAT GCTGCTCTCG TAGGAATAGG AGGCTACATT
GTCATTAGAA TCATCAAATA CGCTTTGGAG AACTACTTGG CCTCAAGAGC CGATAAGGTG
ACCATGAGGA CCGTATCTCT TGTCGTAGAT CTCGTGCTAT ACACTCTCTT GGTGTTGGCA
ATCCTCTCAG CCCTAGGGGT GAATCTAACG GGTGCAGCCA TAGGCGGTGC GGTGGGCGGT
GTGGCCATAG GTTTAGCTGC TCAAACTGTT GTCTCCAACA TTCTATCTGG GGTTATGGTC
ACATCAAGCA GAACCTTGAG ACCTGGAGAC GCGGTTATAC TACAGTCGTG GATTTGGTCT
CCACCCATAG TCGGAGAGGC CGAAAGGGTC ACCCTTCTCT TTACAGAAGT TAGGACTATC
TCGGGAAATT TGGTTAAGGT TCCGAACTCG GCATTCCTTG GAAACACCGT GTTCACCAAG
TTAAAGGAGG ATGGGTCATT TTCCTATCCC TACGAACTCA CGGTTAATGC TGACGTGCCA
GGTAACCTTC TGTTGGAGAA AGCACGCAAC CTCATCGAGG ACGAGTTCAA GAGTATGAAG
GCCCAGCCAC CGGAGATATC ATTCTATAAC AAGAACGGTT CAACTAATGT TTTCCTAGTT
ATGATAAGGC TTGATGAAAT GAAGAACCTT ACCCGTTACC TTGACGTTGT AAACAAAGCC
TTCGAAAGAG CTTACTGGGA ACTCAAGGGT AAATAG
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| Protein sequence | MSSTRPLIRI LVLLIIIGAL VYILHVILSA FIASNSKLVP YVNDVQLGLD AALVGIGGYI
VIRIIKYALE NYLASRADKV TMRTVSLVVD LVLYTLLVLA ILSALGVNLT GAAIGGAVGG
VAIGLAAQTV VSNILSGVMV TSSRTLRPGD AVILQSWIWS PPIVGEAERV TLLFTEVRTI
SGNLVKVPNS AFLGNTVFTK LKEDGSFSYP YELTVNADVP GNLLLEKARN LIEDEFKSMK
AQPPEISFYN KNGSTNVFLV MIRLDEMKNL TRYLDVVNKA FERAYWELKG K
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