| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_B0410 |
|---|
| Symbol | |
|---|
| ID | 4788038 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008826 |
|---|
| Strand | + |
|---|
| Start bp | 364337 |
|---|
| End bp | 366004 |
|---|
| Gene Length | 1668 bp |
|---|
| Protein Length | 555 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640092842 |
|---|
| Product | type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB |
|---|
| Protein accession | YP_001023420 |
|---|
| Protein GI | 124262950 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0410101 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.000278192 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGTGC TCTCCATCCG AGACATCGAG GGCTCGCTGG ATCAGCGGCT GGTCGAGGCC
GCGCTTCGCG AGAAGAACGC CGTCACCGAC CAGCAACTTG CCGTCGCGCT CGCCAAGCAG
CGCGCACTGG CGGAAACCGG CGAACGCGCC GGGCTGTGCG AGATCCTGGT ACGCGATCGT
TTCCTCAGCC GGCCCGCCGC GCTCGAGTTC GTCCAAGGCC TGGCCAACGC CGAGATCGAT
GCGGCGGACG AGATCCTGAC CGACGAGATC TGCGACCGCT ACGCCGTGCG GCCGCTGCAG
GTGGTGGGTG GCGTGCTTCA CCTGGCGGCC GTCAAGCCGC TGCTGCCGGC CCAGCTCGAC
GTCATCCGCG CGACCGCCAA GGTGCGCCTG AATGACATCA AGGTGGTTCC CGTCGCCCGA
CTTGATCACC AGGCGCACCG TCGGCGCGTC GCCGCGACCG GCGTGACGCT GCCCGAGGCG
CTCGCGCGCC TCAAGCGGGA GGAGGTGAGC AGCGAAGGCC TGCGTGCCGT GATCGACGCG
CTCTTGACGG AGGCATCCCT CCAGCGCGCC AGCGACATCC ACATCGACTG CCAGCCCGAC
CCCAACTCGT GGATCAGCTT CCGCGTCGAC GGAAAGCTGC GCCAGTACGC CCCGGTTCCA
GAGCGCGTGA TGGCGGCGAT CTTCACCCGA CTGAAGACGC TCGGCGGCAT GGATGCCAGC
GACAAGCTGC GCCCGCAGGA CGGCCGCATC ACCCACATCC ACAAGGGTCG CCAGATCGAC
CTTCGCATGG CTTCACAGCC TATCATCGGC GGCGAGACGA TCACCCTGCG GCTGCTCGAC
CCCGACTCGC TGCCTTCGAT CTCGCAGCTG TTCGCCGGCC AACCCGAGAT GGCCGAGTTC
TTCACCGGCC TGGCCCGGTT CAACGGCAAG AACGGCGGCC TGGTGCTGAT CTCCGGCCCG
ACCGGCTCGG GCAAGACCGC AACGCTTTAC ACGCTGCTGC AGCGCTTCGA GCGCGATCGC
TTCAATGTGA TCACGGTCGA GGACCCGGTG GAGTACACCG TGTCCTTCGC GCGGCAGATC
CAACTGAACC AGATCCTGAA GCAGCGGGCC GTCGACATCG AGAGCTCGCT GCTGCGGCAC
GACCCGGACG TCATCGTGTT CGGCGAGGTG CGCAACTACG ACATGGCGCT GGCCGTGCTG
AAGCTCGCCG AGTCCGGGCA CATGGTCCTC GCGACCATCC ACGCCGGCAG CGCGATGCAG
ACCTACGAGC GCTTCCTGTC GTTCTTCCCA CAGGAAGCCA AGGGCGACGC AGCCTACATC
CTCGGCCACT ATCTGCGCAC GATCATCAAC CAGCGTCTGG TGCCTCGCCT GTGCAAGTGC
GCCGAGCCGG TCGCGCCGGG GGCTTCCGAG AAGGTGGCTG TGGGCTGCCC CGCGTGCGAT
CACACCGGCT ACATCGGCCG CGTCGTCGCG CACGACTCGG TTCTCCTGCC AAGCGACGAG
GCGCGCCGCG CACCGATCGC CAAGGCCATC GCGGATGCCG GCTCCCGCCT CGACGGCGCA
CTCAGCTGCG ACGGCGCACG CCACATCTCG CGTAGCGAGG TGCTGTCATC GCTGCTCAAG
GCTGGCGCGA TTGACGAAGC GACACTGCGT CGCGTGATGG AGGGCTGA
|
|---|
| Protein sequence | MSVLSIRDIE GSLDQRLVEA ALREKNAVTD QQLAVALAKQ RALAETGERA GLCEILVRDR
FLSRPAALEF VQGLANAEID AADEILTDEI CDRYAVRPLQ VVGGVLHLAA VKPLLPAQLD
VIRATAKVRL NDIKVVPVAR LDHQAHRRRV AATGVTLPEA LARLKREEVS SEGLRAVIDA
LLTEASLQRA SDIHIDCQPD PNSWISFRVD GKLRQYAPVP ERVMAAIFTR LKTLGGMDAS
DKLRPQDGRI THIHKGRQID LRMASQPIIG GETITLRLLD PDSLPSISQL FAGQPEMAEF
FTGLARFNGK NGGLVLISGP TGSGKTATLY TLLQRFERDR FNVITVEDPV EYTVSFARQI
QLNQILKQRA VDIESSLLRH DPDVIVFGEV RNYDMALAVL KLAESGHMVL ATIHAGSAMQ
TYERFLSFFP QEAKGDAAYI LGHYLRTIIN QRLVPRLCKC AEPVAPGASE KVAVGCPACD
HTGYIGRVVA HDSVLLPSDE ARRAPIAKAI ADAGSRLDGA LSCDGARHIS RSEVLSSLLK
AGAIDEATLR RVMEG
|
|---|
| |