| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_0084 |
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| Symbol | |
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| ID | 7272254 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanosphaerula palustris E1-9c |
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| Kingdom | Archaea |
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| Replicon accession | NC_011832 |
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| Strand | + |
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| Start bp | 93948 |
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| End bp | 95315 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643568742 |
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| Product | coenzyme F420 hydrogenase, subunit alpha |
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| Protein accession | YP_002465201 |
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| Protein GI | 219850769 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG3259] Coenzyme F420-reducing hydrogenase, alpha subunit |
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| TIGRFAM ID | [TIGR03295] coenzyme F420 hydrogenase, subunit alpha |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0042117 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0638209 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCGAAAG TTGTAGAGAT ATCCCCAACG ACGAGACACG AGGGACATTC CAAGCTCGTT
TTGAAGGTAG ACGACGCGGG CATCATTGAG CGTGGTGACT GGCTCAGTAT CACCCCGGTC
AGGGGTGTCG AGAAACTGGC AATTGGCAAG ACGATGGATC AGGTGCCAAA GATCGCATCA
CGGGTCTGTG GTATCTGTCC GGTTGCACAC ACCATTGCAG CGACCGAAGC GATGGAAGCA
TCGATTGGAT GTATCATCCC TGACGATGCC TACCTGCTTC GTGTGATCAT GCAGTGTGCC
AACCGTGCCC ACTCGATTGC ACTGCACAAC ATCCTTTCCC TGCCGGACAT GTACCTGCCA
GGGACTGACA CCAAGATCAA CCCGTTCAGC CCAGAGGAAC CGGTCAGATC GGTTGCCAAG
CGGATCCAGC GGATCCGTGA GATCAGTCAG ACGATCGGAG AGATCGCCGG TGGCGAAGCG
GTTCACCCCA GCAACACCCG TGTTGGTGGT ATGTTCGTCA ACGTCAGCCC ACGGGCCAAG
GCCAAGATGT ACGATCTCGC CAAGGAAGGG CTCGCCCTTG CTCGCGACCA GATGGAGTTC
ATGATCGCAA TCTTCAGGAA CTACCAGAAG CGTGACTGGG CAGAGGTCGG CGGCATGAAG
GTCGACATTC CCGAGACGCT CGGATACCAC AACCAGGGAT ACATGGCGAC TGACCCGATC
TATGGATCGA GCAGCCTCGA TGAGAACCCA ACCTGGGACA TCTCGCGGTT CAACGAAGTC
CGCCCCTGGG ACTGGTATAT GGGTGAGATG GAAGTCACCG ACGACTATCC AGACTATCCA
GTCGGCGGCA CCACCGCGAA GGGGACCAAG ACCTGGCCAC AGATGGAAGC AAACACCGGT
GTGCCACTGT ACGACGGACA GCCTGTTGAG GTTGGACCCC GTGCCCGTAT GGTCACGTTC
AAGAACTTCG ATGAGAAGGG AACGATCGGT CAGCAGGTCG CACGTCAGAT GGAATACACT
GACTCCTTCT ACAAGTTGAT CGAGTGCCTG GATGCACTGA ACACGAACGG CAAGGTCTTT
GTGGACGAGC TCCCAACAGG CGACGGTTCA CTCGGTTGGG CAGCCAACGA GGCTCCCCGT
GGCAGCGATG TCCACCTGGC CCGTGTCAAC AACGGCAAGG TCGAGTTCTT CTCGATGCTG
GTCCCGACGA CCTGGAATTT CCCAACCTGC AGTCGTGCCC TGACCGGTGC ACCCTGGCAG
CTCGCAGAAG TTATCATGCG CGGGTACGAC CCGTGTGTAT CATGTGCCAC CCACATGATT
GTTGTAGACG AAGATCAGAG GATAGTAGCC CAGAAGCTCA TTCAGTGA
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| Protein sequence | MSKVVEISPT TRHEGHSKLV LKVDDAGIIE RGDWLSITPV RGVEKLAIGK TMDQVPKIAS
RVCGICPVAH TIAATEAMEA SIGCIIPDDA YLLRVIMQCA NRAHSIALHN ILSLPDMYLP
GTDTKINPFS PEEPVRSVAK RIQRIREISQ TIGEIAGGEA VHPSNTRVGG MFVNVSPRAK
AKMYDLAKEG LALARDQMEF MIAIFRNYQK RDWAEVGGMK VDIPETLGYH NQGYMATDPI
YGSSSLDENP TWDISRFNEV RPWDWYMGEM EVTDDYPDYP VGGTTAKGTK TWPQMEANTG
VPLYDGQPVE VGPRARMVTF KNFDEKGTIG QQVARQMEYT DSFYKLIECL DALNTNGKVF
VDELPTGDGS LGWAANEAPR GSDVHLARVN NGKVEFFSML VPTTWNFPTC SRALTGAPWQ
LAEVIMRGYD PCVSCATHMI VVDEDQRIVA QKLIQ
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