| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1828 |
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| Symbol | |
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| ID | 4480444 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | + |
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| Start bp | 2266722 |
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| End bp | 2268623 |
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| Gene Length | 1902 bp |
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| Protein Length | 633 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639722570 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_865742 |
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| Protein GI | 117925125 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4785] Lipoprotein NlpI, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0732208 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGCATG TTAAGCTAGG ATTAAACCGG TTATTTTGGC TTGTTTTGTT GCTGGGGCTT
AGCGGGTGTG CCACGTTGTT GCGTCCCGCC CCACCCAAAC AGGAAACCCA GGATGCCCTA
AATCTTGCTT ACCGTGGCGA GTTGATTGCC AAAAGAGGGG GCTATGAAGC CTCTATTAAA
CTCTTTTCGC AAGCCCTTGA GCACACAGAT TTAACACCTG AGCAGCGGGC TATCGTATTA
AACAATCGCG GGGCATCCTA TAAGCGCATG GGGTTGGATG AGTCCGCCTT AAAAGATTTG
GATGAGTCAC TATCGCTGCA ACCTAAACAT ATTCGTTATC TAAACAATCG CGCCATGGTT
AAGTTGTTTT TGGGGGACTA CCCAAGCAGT GACCAGGATT TTGCACAACT GCTGGAAACA
AACCCCAATC TTGCCAACCC CTATCCACGG CTATGGCGTT TTTTTGCTCT ACGCGCCTAC
GACCAAAGCA GCGCTTTAGC ATGGCTCAAC GCCCAATTGC CCATCTTACG CCCCTACCCA
TGGCAGGAGG CCTTGGCACT CTTTCACTTG GGGCGTTTGG ATCACAAGCA GCTCATGACC
TTGGCGATGA CCCTAAAATC GGGGCCAGCA GCGATGCGTC GTTGTGAATG GTTGTTGCAT
ACCGCCTTTG CCGACCAGAT GCAGGAGCAC CCTGTTCAAG CCCTATACGG TTTTGAACGG
AGTCTGGCCT ACTGCCCTGT GCAGAGCGAT CAAGCGCTCT GGGCACGGCG TCAGTTGACC
AAATTATCCG CCTATCAAGG CGTGATTGAA CGGCCAAACG CCCAACCCCC CGTTCTGGCT
GCCATGGATC CAGCCCCCCA GAGTGAGACC CAGGAGCAAA TAAGCAAGCC TGTTCAAACC
GCACAAGCTG ATGTCGTTGC GTATGAGATA CAGGACAAGC CCGCGCATGG GGCGCGCTCT
TCAGAAAAAG TCCAAGTGCA ACCAGCGGTT TCTCTCAAGG CCGCCCCACC GGCATTGGTA
GCTGCCCCTG AAACCGCCAA ACGGCCCAAA CCCCATACGG TGAAAGCGCT TCCCCACCCG
GAGGGGGGTG CTTCGCTAGA GCAGGACAAG CCCGCGCATG GGGCGCGCTC TTCAGAAAAA
GTCCAAGTGC AACCAGCGGT TTCTCTCAAG GCCGCCCCAC CGGCATTGGT AGCTGCCCCT
GAAACCGCCA AACGGCCCAA ACCCCATACG GTGAAAGCGC TTCCCCACCC GGAGGGGGGT
GCTTCGCTAG AGCAGGACAA GCCCGCGCAT GGGGCGCGCT CTTCAGAAAA AGTCCAAGTG
CAACCAGCGG TTTCTCTCAA GGCCGCCCCA CCGGCATTGG TAGCTGCCCC TGAAACCGCC
AAACGGCCCA AACCCCATAC GGTGAAAGCG CTTCCCCACC CGGAGGGGGG TGCTTCGCTA
GAGCAGGACA AGCCCGCGCA TGGGGCGCTC TCTTCAGAAA AAGCCCAAGT GCAACCAGCG
GCTCCCACCA TGAGGTCACC GGCGGCACCA GCGGTACTCT CCCATGCAGC TACACCATCA
GCCGATGGTG CGGTCGCGCC ATCTTCAGAA CCCCCTGAAA CGGCACACAG ACAAACGGTC
TACTGGGTAG AGTTGGGTTA TTATAAATAT AGGAATATTG CCAAAAACGT CATCGCTTAT
GTGGAAAAAT TGGGGGTGCC AACAAAATAT GTTGAACGCC TTGTTAAGGG AGAACCGATG
ATTCGTTTAC ACGCAGGTCC CTTTGCACAA ACGCAACAAG CTGTTGCGGT GCAACAACAG
CTCTTGACAG AACAGATAGA TGTGGGAGAG GTGGTGTTTT TTGATGCCCA AGGCGTGCTC
CACACCGTCG TGGTCACAGA AAAGCTCAAC TCATCTCAGT GA
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| Protein sequence | MRHVKLGLNR LFWLVLLLGL SGCATLLRPA PPKQETQDAL NLAYRGELIA KRGGYEASIK
LFSQALEHTD LTPEQRAIVL NNRGASYKRM GLDESALKDL DESLSLQPKH IRYLNNRAMV
KLFLGDYPSS DQDFAQLLET NPNLANPYPR LWRFFALRAY DQSSALAWLN AQLPILRPYP
WQEALALFHL GRLDHKQLMT LAMTLKSGPA AMRRCEWLLH TAFADQMQEH PVQALYGFER
SLAYCPVQSD QALWARRQLT KLSAYQGVIE RPNAQPPVLA AMDPAPQSET QEQISKPVQT
AQADVVAYEI QDKPAHGARS SEKVQVQPAV SLKAAPPALV AAPETAKRPK PHTVKALPHP
EGGASLEQDK PAHGARSSEK VQVQPAVSLK AAPPALVAAP ETAKRPKPHT VKALPHPEGG
ASLEQDKPAH GARSSEKVQV QPAVSLKAAP PALVAAPETA KRPKPHTVKA LPHPEGGASL
EQDKPAHGAL SSEKAQVQPA APTMRSPAAP AVLSHAATPS ADGAVAPSSE PPETAHRQTV
YWVELGYYKY RNIAKNVIAY VEKLGVPTKY VERLVKGEPM IRLHAGPFAQ TQQAVAVQQQ
LLTEQIDVGE VVFFDAQGVL HTVVVTEKLN SSQ
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