| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_0610 |
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| Symbol | |
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| ID | 5834989 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylobacterium extorquens PA1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010172 |
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| Strand | - |
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| Start bp | 670299 |
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| End bp | 672455 |
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| Gene Length | 2157 bp |
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| Protein Length | 718 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641366393 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_001638095 |
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| Protein GI | 163850052 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.112929 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGTTAACG GTCGGTCAAC GCACGGCAAG TTAGAGCGGA TGCAACGAGA ATCGGCGCGG
GCACTCGACA AGCGCGCCAT TCCACGACAT TGCGACGGGT CTTTCGCGGA GCGCGGGCTC
AGCCTGCGGC GCCGCCACGA GAACAATAGG CTGAGCATGG CAACGAAGGC AACCGAGCGG
GACGATGCGG ACGCCGCCCA GGATCAACCG ACGGACGGCC CGCTCCTTGA CCTGACGGAT
GCCGCCGTCA AGCGGATGGT CAAGCTCGCG AAGAAGCGCG GCTACGTCAC CTACGAAGAG
ATCAACGAGG TCCTCCCGGA CGGTCAGGTC GACGGCGACC AGATCGAGGA CGTGCTCGCG
CAGCTCGACG ACATGGGCAT CCGCGTGGTC GAGGCGGAGG AATCCGAGGA GGCTGCCCCC
GAGGCCAAGG CCAACGGCGA AGCCTCCGAG GAGGAGGAGA GCACGGAAGG CGGAGAGGTT
GCCGAGACCT CCGGCACCCG CGCCGTCGCG GTGGCGACTC CCACCACGCG CGAGCCGACC
GACCGCACGG ACGATCCCGT GCGCATGTAT CTGCGCGAGA TGGGCTCGGT GGAGCTGCTC
TCGCGTGAGG GCGAGATCGC GATCGCCAAG CGCATCGAGG CCGGCCGCGA GGCGATGATC
GCGGGCCTCT GCGAGAGCCC GCTGACCTTC CAGGCCATCA TCATCTGGCG CGACGAACTC
GTCGACGGCA AGGTGCTGCT GCGCGATATC ATCGATCTCG AAGCCACCTA TGCCGGCCCC
GACGCCCGCG GCGCGCCGCA GGAGGCGGAA GCCGAGGGTG AGGAATCGGA GGAGGCCGAA
GGCGCCGTCC CGCCGGAAGG CGGCGACGAC GAAGACGACA TGGAGAACAA CGTGTCGCTT
GCGGCCATGG AGGCCGAGAT CAAGCCGCGG GTTCTCGAAA CCTTCGACAA CATCGCCTCG
AACTACCGCA AGCTGCGCAA GCTCCAGAAC GAGGAGACGG AGCTGAAGAC GGGCGGTGGC
ACCGTCACCT CCGCGCAGAC CAAGAAGCAG GCCGAGCTGA AGGACATCGT CGTCACCGAC
GTGAAGTCGC TCTCGCTCAA CGCCAACCGC ATCGAGGCCC TGGTCGAGCA GCTCTACGAC
ATCAACAAGC GCCTCATCTC GCATGAGGGC CGCCTGATGC GCGCCGCCGA GCACCACGGC
GTCGCCCGCG ACGAGTTCCT GCGCCACTAC CAGGGCTACG AGCTCGATCC GAACTGGATG
GACCGCGTCG CCACGCTGGG CGGCAAGGGC TGGAAGAACT TCGTCGAGCG CGGCGGCCGT
CAGGTTGCGG ACCTGCGCGA GCAGATCCTG ACACTCGCCT CCGAGACCGG CCTGCAGATC
GGCGAGTATC GCAAGATCGT CGCCATGGTG CAGAAGGGCG AGCGCGAGGC CCGCCAGGCG
AAGAAGGAGA TGATCGAGGC CAACCTGCGC CTCGTGATCT CGATCGCCAA GAAGTACACC
AACCGCGGCC TGCAGTTCCT GGACCTGATC CAGGAGGGCA ATATCGGCCT GATGAAGGCG
GTCGATAAGT TCGAGTACCG CCGCGGCTAC AAGTTCTCGA CCTACGCTAC GTGGTGGATC
CGGCAGGCGA TCACCCGCTC GATCGCCGAC CAGGCGCGCA CGATCCGCAT TCCGGTGCAC
ATGATCGAGA CGATCAACAA GATCGTCCGC ACGTCGCGCC AGATGCTGCA CGAGATCGGC
CGGGAGCCGA CCCCGGAGGA GCTGGCCGAG AAATTGGCCA TGCCGCTGGA GAAGGTGCGC
AAGGTCCTGA AGATCGCCAA GGAGCCGATC TCCCTCGAAA CGCCGATCGG CGACGAGGAG
GATTCGCATC TCGGCGACTT CATCGAGGAC AAGAACGTCG TCCTTCCGAT CGACGCGGCG
ATCCAGTCGA ACCTGCGCGA GACCACGACC CGTGTGCTCG CCTCGCTGAC GCCGCGCGAG
GAGCGTGTGC TGCGCATGCG CTTCGGCATC GGCATGAACA CCGACCACAC CCTCGAAGAG
GTGGGTCAGC AGTTCTCGGT GACCCGCGAG CGCATCCGCC AGATCGAGGC GAAGGCCCTG
CGCAAGCTCA AGCATCCGAG CCGGTCGCGG AAGCTTCGAA GCTTCCTCGA CAACTGA
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| Protein sequence | MVNGRSTHGK LERMQRESAR ALDKRAIPRH CDGSFAERGL SLRRRHENNR LSMATKATER
DDADAAQDQP TDGPLLDLTD AAVKRMVKLA KKRGYVTYEE INEVLPDGQV DGDQIEDVLA
QLDDMGIRVV EAEESEEAAP EAKANGEASE EEESTEGGEV AETSGTRAVA VATPTTREPT
DRTDDPVRMY LREMGSVELL SREGEIAIAK RIEAGREAMI AGLCESPLTF QAIIIWRDEL
VDGKVLLRDI IDLEATYAGP DARGAPQEAE AEGEESEEAE GAVPPEGGDD EDDMENNVSL
AAMEAEIKPR VLETFDNIAS NYRKLRKLQN EETELKTGGG TVTSAQTKKQ AELKDIVVTD
VKSLSLNANR IEALVEQLYD INKRLISHEG RLMRAAEHHG VARDEFLRHY QGYELDPNWM
DRVATLGGKG WKNFVERGGR QVADLREQIL TLASETGLQI GEYRKIVAMV QKGEREARQA
KKEMIEANLR LVISIAKKYT NRGLQFLDLI QEGNIGLMKA VDKFEYRRGY KFSTYATWWI
RQAITRSIAD QARTIRIPVH MIETINKIVR TSRQMLHEIG REPTPEELAE KLAMPLEKVR
KVLKIAKEPI SLETPIGDEE DSHLGDFIED KNVVLPIDAA IQSNLRETTT RVLASLTPRE
ERVLRMRFGI GMNTDHTLEE VGQQFSVTRE RIRQIEAKAL RKLKHPSRSR KLRSFLDN
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