Gene Memar_1801 details

Gene Information

• Locus tag: Memar_1801
• Symbol: rps4p
• ID: 4846333
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methanoculleus marisnigri JR1
• Kingdom: Archaea
• Replicon accession: NC_009051
• Strand: +
• Start bp: 1793379
• End bp: 1793927
• Gene Length: 549 bp
• Protein Length: 182 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 640116500
• Product: 30S ribosomal protein S4P
• Protein accession: YP_001047709
• Protein GI: 126179744
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0522] Ribosomal protein S4 and related proteins
• TIGRFAM ID: [TIGR01018] ribosomal protein S4(archaeal type)/S9(eukaryote cytosolic type)

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.147092
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGATATC CAGGAAAAAA CCATAAACAG TACGCGACGC CCAAGCGGCG GTTCGAGAAG 
ACCAGACTTG AGGACGAAAA GCGGCTCATC ATCGATTACG GCCTGCGGAA CAAGCGCGAA 
CTCTGGAAAG CCCAGAGCGT GCTACGGAAA TACCGCGCCG GCGCCCGTGA ACTGGTGGCG 
CTGCGCTCGG GTGGGCTCAG CACGGAGGAC TACCTGAAGA AGAGAGACCA GCTCGTCAAC 
CACCTGTACC GCTACGGTCT CGTCGGCGAG AACGCCGATG TCGGTGACGT TCTCGCGCTC 
AAAGTCGAGC AGCAGCTCGA CCGCCGGCTT CAGACGCTGG TTCTCCGCAG AGGGTTCGCA 
CGATCCCCCA AGCAGGCGCG CCAGTTCATC ACCCACGGCC ACATCGCGAT TAAAGGTCGC 
CGCGTGACCA TCCCTGGTTA CCGGGTCGAG AGAGCCGAAG AGGCCGAGAT CAGTTACTAC 
GGCCCCTCCC CGCTCACGAA CGAGGTTCAT CCCGAGAGAA GCCGCATCGC CCGCGCAGGA 
GTGAGGTAA 

 

Protein sequence

MGYPGKNHKQ YATPKRRFEK TRLEDEKRLI IDYGLRNKRE LWKAQSVLRK YRAGARELVA 
LRSGGLSTED YLKKRDQLVN HLYRYGLVGE NADVGDVLAL KVEQQLDRRL QTLVLRRGFA 
RSPKQARQFI THGHIAIKGR RVTIPGYRVE RAEEAEISYY GPSPLTNEVH PERSRIARAG 
VR