| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Memar_0417 |
|---|
| Symbol | |
|---|
| ID | 4845953 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanoculleus marisnigri JR1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009051 |
|---|
| Strand | - |
|---|
| Start bp | 401030 |
|---|
| End bp | 403237 |
|---|
| Gene Length | 2208 bp |
|---|
| Protein Length | 735 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640115092 |
|---|
| Product | (NiFe) hydrogenase maturation protein HypF |
|---|
| Protein accession | YP_001046332 |
|---|
| Protein GI | 126178367 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0068] Hydrogenase maturation factor |
|---|
| TIGRFAM ID | [TIGR00143] [NiFe] hydrogenase maturation protein HypF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTACCA GTGGCACAAT AATCATACGG GGCATCGTCC AGGGAGTCGG GTTTCGTCCC
TTTGTCTACG CAAAAGCCCG GGAATTCGGG ATCACGGGGA CCGTCAAAAA CCTCGGGAGC
GAGGTCGAGA TCCATGCATC CGGCGACCGC TTCGAGGAAT TTTTTGAGGC CGTTTCCAGA
GGGACGCCAT TATCTCAAAT AGATTCCGTA GATGTCCAGA ATTTGCGCGG TAGCCCGACC
GAAGGGTTTA CCATCCTCGA GAGTAATTCC GGGAGCCTCT CGGGGTTCAT CCCGACCGAC
GTCGCCACCT GCGACGACTG CATCGCCGAT ATTTTTACGC GGGACGGGCG ATACGAAGGT
TACTGGGCCA CCTCCTGCGT CAACTGTGGG CCCCGGTACA GCATCATCAG TACCATCCCC
TACGACCGGG AGCGGACGTC GATGGCGGAG TTCCCCGTCT GCCCCGCCTG CGAGGGCGAG
TACACCAACC CGTCGTGCCG CCGCCACCAC GCCCAGACGA TCGCCTGTGC GGCCTGCGGA
CCGCACCTCG CTCTCCTCCG GGCCGACGGA ACGCCGGCGG CGGGCGACCC CATCCGGGAA
ACGGCGGCCC TCCTGGACGC TGGCTCGATC GTCGCCATCC GGGGAATCGG GGGGTTCCAT
ATCGCCTGCA CCGAGGAGGC GGCAGGGGTT CTGAAACGCC GCCTCGGACG GACAGAGCAG
CCGCTCGCGG TGATGGCAAC CGCAGAGGAG GTAGAACGGA TCGCGATCGT CTCGGACGAG
GAACGGCGGA TCCTCCACTC CCGGGAACGG CCGATCGCGG TGCTCGAAAA ACGCGATCCC
GCGTCCCACC CGACGATCTC GAGCCTCCAC ACCATCGGGT GCATGCTCCC CTACACCGGG
CTGCACCACC TCCTCTTCGC GAACCTCGCC CACCCGCTCC TCGTCATGAC GAGCGCGAAC
CTGCCGGGTT ACCCGATGAT CACCGATCTC GATACCGCGC TTGAACGGCT CCCGGGGCAG
GTTGACTACA TCCTCACCCA CGACCGCCGG ATCGTCAACC GGTGCGACGA CTCCGTCGTC
CGGGACGGCT ACATCATCCG GCTCTCCCGC GGCCTCGCCC CGAAGCGGAA GGCGATCGAC
CTCGGTGGGG GATCCATCCT CGGCGTCGGC CCGGAGTTGA ACGCGAACAT CTCCATCTAC
AAGAGCGGTT TCTGCATCAC CTCCCCCCAC GTCGGGAATG TCAGGAACCC CCAGACCCTC
GCTTACCTGC AGGAGACGGC TGAACGGCTC GGCGGGCTCA CCGGCGCCCG GTACGACCGG
ATCGTTCACG ACCTCCACCC GCAGTTCCTC TCGACCCGCT ACGCGAGGGA GGTTGCCGAA
GCGGTCGGGG CGGAGCTCCT CGCCGTCCAG CACCACCGGG CGCACATCGC CGCCACGACC
CGGGAGGAGT GCGTCGGGAT CGCGATCGAC GGCGTGGGCT ACGGCGACGA CGGAACAATC
TGGGGCGGCG AGGTGTTTGC GGGAGAGGTC CCCCACCTCG ACCGGGTCGC TCACCTCGAG
GTCGTCCCGA TGCCGGGCGG CGATCTCGCC ACCCGGTTCC CGGAGCGGAT GCTCTACGGC
ATCCTCCCCA CCTCCGAAGT CCGGGACATG CTCGCGTCAC GGGGCTGGAG CGATATCGAA
CTCGCCGTCC TCGTCAGGCA GGTGGAGCGG GGCCTGAACG TCGCCGCGAC ATCGAGCACC
GGCAGGGTGC TGGACGCCGG CGCGGCCCTC CTCGGGATCT GCCGGGAGCG TACCTACGAC
GGGGAGCCGG CGATGAAACT CGAGACGGCG GCGCACGCCG GGAAGCCCTC GGCCTGGGAG
AACGAATACC AGCGGGACGG CGGCTGCGAG GTTCTCTCGA CCCGGTCGCT CCTCGCGGAG
GCCCACCGGC GGTCCGCCGC CGGAGAACGG GCAAACGACA TCGCCGCATC GATCCAGTAC
AACCTCGCCC GGGGCGTCGC CGCGATGGCC GTCCGGGCGG CCGAAGAGCG GGGGATCCCC
CGGGTGGCGC TCTCGGGCGG GGTGGCCTAC AACCGGGCGA TCCGCGAGAC GATCCGGACT
GAGGTACTCG CCGCTGGGCT CGAGTTCATC ATGAATAAGG ACTATCCGCT CGGCGACGGG
TGCATCAGCT TCGGGCAGGT TGTCTACGGG GGGAGCACGG AGAAGTGA
|
|---|
| Protein sequence | MRTSGTIIIR GIVQGVGFRP FVYAKAREFG ITGTVKNLGS EVEIHASGDR FEEFFEAVSR
GTPLSQIDSV DVQNLRGSPT EGFTILESNS GSLSGFIPTD VATCDDCIAD IFTRDGRYEG
YWATSCVNCG PRYSIISTIP YDRERTSMAE FPVCPACEGE YTNPSCRRHH AQTIACAACG
PHLALLRADG TPAAGDPIRE TAALLDAGSI VAIRGIGGFH IACTEEAAGV LKRRLGRTEQ
PLAVMATAEE VERIAIVSDE ERRILHSRER PIAVLEKRDP ASHPTISSLH TIGCMLPYTG
LHHLLFANLA HPLLVMTSAN LPGYPMITDL DTALERLPGQ VDYILTHDRR IVNRCDDSVV
RDGYIIRLSR GLAPKRKAID LGGGSILGVG PELNANISIY KSGFCITSPH VGNVRNPQTL
AYLQETAERL GGLTGARYDR IVHDLHPQFL STRYAREVAE AVGAELLAVQ HHRAHIAATT
REECVGIAID GVGYGDDGTI WGGEVFAGEV PHLDRVAHLE VVPMPGGDLA TRFPERMLYG
ILPTSEVRDM LASRGWSDIE LAVLVRQVER GLNVAATSST GRVLDAGAAL LGICRERTYD
GEPAMKLETA AHAGKPSAWE NEYQRDGGCE VLSTRSLLAE AHRRSAAGER ANDIAASIQY
NLARGVAAMA VRAAEERGIP RVALSGGVAY NRAIRETIRT EVLAAGLEFI MNKDYPLGDG
CISFGQVVYG GSTEK
|
|---|
| |