| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_2016 |
|---|
| Symbol | |
|---|
| ID | 5411897 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | + |
|---|
| Start bp | 2087870 |
|---|
| End bp | 2089639 |
|---|
| Gene Length | 1770 bp |
|---|
| Protein Length | 589 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640869258 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_001405173 |
|---|
| Protein GI | 154151555 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2202] FOG: PAS/PAC domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.115165 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACCC ACGATGCCGA ACTCCGCGTG ATTAAAGATC TCCTGCGCAA CAACCCGAAG
GGTATGAAAA TTACCCGAAT TGCCCGCGAT CTTGCGATGA ACCGGAACAC GGCCGCAAAA
TTCCTCGAGA TCCTTCTCAT GACCGGGCAG GTCGAAGTGG TCGAGCACGG GAAGTCAAAA
ATTTTCATCA TTTCGCGACG GACAAGTATC CCGACGATGC TGGATCGTTC CGCGGATTTT
ATTCTCGTCC TGGACCAGGA CATGAAGATA TCAGAGGTAA ACGATAACTA TCTGAAATTT
GTGGGACGGG CACGGGGGGA TCTTCTCGGG AAACGACCGG GCACCACCGG GCTTCCGGTC
ATTGGCAGGC AACCGGTCGT TGAAAAAATC CGGGAAGCTC ATTACGGGGC CGATATCCGG
ACCGAACTAC ACGAGGTCCT TCCCACGGGG GAATTTTACT TTGATCTCCG TATAACTCCT
ACCACGTTTA ACACCGGGAA AAGGGGAATA ACGATCATTA TCGGGGACAT TACAAGGGAG
AAGAAGAGCG CGATCTCTGT CAGGGAAAGC GAGGCGAATT TCCGGACCTT GTTTGGCGAG
TCCCCTGTTG GCACTGCAGT CTTTGATTCC GCTGGAGAAC TCGTGAATGC AAACCCGGCA
TTTCTCAGAC TGGCCGGTGT GAAAACCCGG GATGAAATCG GTTCCCCCAA CCTGTTCTCC
CTTGAAGGGA TCCCCCCCGG GTCGCGGGAT CTCCTGAACA CCGGGAAAAA AGTGAGATTT
GAATCAGATA CCGGTTTTGA TGGTGTGAAG GATACTGGTG CCGCCCCCGG CATCGGGCCG
GAAGGTATGG TCTTTGACGT TCGGATAACG CCGGTAAAAC TTACCCTGGG GGAGCAGCAG
GCCGGCTATC TTCTCCAGAT CCATGAAAGC CAGGCCGGGT TCCGGCGGAT TATTGACCAT
GCCCCGGATC TTATTGCACG GTTCAGCCGC GATCTGAAGT ACCTGTATGC CAACCGGGAG
ATTGAGGTGG TGACCGGGAT AACCGCGGGC GAAGTTATCG GCAGGACGAA CCGGGATCTT
GGGATCCCGC CCGAAACCGC CCTGCTCTGG GATGAGACCA TACAGAAGGT TGTTACTACC
GGAAAACCGG TGTCGTTCGA ATTCCCGCTT CCCCACTGCG ATGAACTTCG CTGGTACCGT
ACGAGTTGTG CTCCTGAACG AAGCGGGAGC GGCGATGTTG TTTCCGTTAT TACGGTAACT
CGTGATATCA CCGGGCAGAA AGAGCGCGAG TCTGATGCCG CGCAGAACAG GAAGCTTGTG
GAAGAGGTTC TCTCCTGCAT TGATGATGCC GTCATTCTCG TAGACTCGCG CACTTCAACA
ATTTCATTCG TAAATCCGGC GGTCACAAAA ATGTTCGGGC ACTCGCGGGA GGAGTTGATG
GGAAAAGACC CGGTGCTCCT GTTCGGCGCC GGGGGATCGA TCCCGGGGTA TCCCGCGAAC
CTGACGGAGA TTTCCGGGAA CAGTGAGTTC TGCGAGATAG AATCCCGGAT GAAACGAAAA
GATGGCGAGA AATTCCCCGT ATCCCTGCTC CTCCGCTCTA TCTGCGATGA TGCAGGACAG
ACAAAAAACA TTGTTCTGGT TGTCCGGGAC ACAACCGGAC GGAAGTGGGC AGGGGAGGGG
AACCTGCAAT GCACTCCGTG GAACCCGAAT GCCTCCCAGT ATTCCCGTAT CTTTCCCGCA
GATCCCTTCA GGCACGGGCA GGCAACGTAA
|
|---|
| Protein sequence | MKTHDAELRV IKDLLRNNPK GMKITRIARD LAMNRNTAAK FLEILLMTGQ VEVVEHGKSK
IFIISRRTSI PTMLDRSADF ILVLDQDMKI SEVNDNYLKF VGRARGDLLG KRPGTTGLPV
IGRQPVVEKI REAHYGADIR TELHEVLPTG EFYFDLRITP TTFNTGKRGI TIIIGDITRE
KKSAISVRES EANFRTLFGE SPVGTAVFDS AGELVNANPA FLRLAGVKTR DEIGSPNLFS
LEGIPPGSRD LLNTGKKVRF ESDTGFDGVK DTGAAPGIGP EGMVFDVRIT PVKLTLGEQQ
AGYLLQIHES QAGFRRIIDH APDLIARFSR DLKYLYANRE IEVVTGITAG EVIGRTNRDL
GIPPETALLW DETIQKVVTT GKPVSFEFPL PHCDELRWYR TSCAPERSGS GDVVSVITVT
RDITGQKERE SDAAQNRKLV EEVLSCIDDA VILVDSRTST ISFVNPAVTK MFGHSREELM
GKDPVLLFGA GGSIPGYPAN LTEISGNSEF CEIESRMKRK DGEKFPVSLL LRSICDDAGQ
TKNIVLVVRD TTGRKWAGEG NLQCTPWNPN ASQYSRIFPA DPFRHGQAT
|
|---|
| |