Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mboo_0906 |
Symbol | |
ID | 5410402 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Candidatus Methanoregula boonei 6A8 |
Kingdom | Archaea |
Replicon accession | NC_009712 |
Strand | + |
Start bp | 886604 |
End bp | 887875 |
Gene Length | 1272 bp |
Protein Length | 423 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640868132 |
Product | pseudouridylate synthase |
Protein accession | YP_001404067 |
Protein GI | 154150449 |
COG category | [S] Function unknown |
COG ID | [COG0585] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0000103937 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGAGAAA GTCCGTATCC GCTCGAACGC GAGCTCGGGA TGCAGTTTTA TGCGACCGAC ACCCCCGGTA CCGGCGGGAC GCTGCGCACC GTGCCGGACG ATTTTATCGT AGATGAAATA CCCCTTGAGA AAAAAGGCAG CCCCTCCGGC CCGTACCTGA TCTGCCGGCT CACAAAGACC AGCTGGGAAC TCCAGCATGC GGTAAAGGAG ATAGCAAAAA GGCTCAATAT CAGCCACCGG CGGATAGGCT GGGCCGGGAC CAAGGACAGA AACGCCCGGA CCACGCAACT GATCTCGATC TACAAAGTGA CCCCGGAACA GGTTGCTGCA TTGCACCTCA GGGATATCAC CCTTGAAGTG CTCGGGCAGG CAAACGAGCA GCTCTCGCTG GGTGATCTCA CCGGAAACCG GTTTGATATC TGGATCCGGG ATGCAGACCC GGAAGATTTG GATAACCGGG TTGTATCTGT TACCGAAGCT GCGGCCATTG CCCTGCCCAA CTACTTCGGG CTCCAGCGCT TTGGCGTGAT CCGTCCCCTT ACCCACCGGA TCGGCGAATA TATCCTCCGC GGCGAATACG AGCAGGCAGT GGCAACCTAT GTGGGCCAGG CATTCCCTCT CGAAAACGAG GTGGCACGCA GGGCCCGGAC CGTTTATTGG GACACAAGGG ACCCGGCAGC TGCCCTCAGT GACCTTCCTG TTGCGATGTC CTTTGAGCGA TCCATGCTAT CGTATCTCCA GGCCCATCCC GGCGATTATC CCGGGGCACT CCGGCAGCTC CCCCCAAAGC TCCTCTCCAT GTTTGTCTCC GCGTTCCAGT CGTACCTCTT TAACTATGCC CTCTCGCACC GCCTTGCTGC CGGCCATAGC CTTACCGGGG CCGTACCCGG CGACCGGCTC ATCTTTGCCA ACGGTCGGAC CGATACCGCA ACTGCCGCCA GCAGTGCAGC GATCTCCCTT CACCTTGCCC GGGGGCGCTG CTCGATTGCT CTCTTTATGC CGGGCAGAGA CGCGGCGGGA GCTCCTGCTG GTGACGAGGC TACGCAGGCA ATGCTTGCCG ACCTCGGGAT AAATCAGGAT CATTTCCGCC GGGCCTCGGA GTTCGTGCAG ACCAAATTTG ACGGGGCATG GCGCCCGATA GCGCTCCGTA CTCCCGTCGA GACCGTCGTG AAGGACAGGG ATCTCCGGCT CCGGTTTACC CTACCCCCGG GCCATTACGC CACAACCGTC TGCCGGGAAT ACATGAAAGC AGACCCTGTC CGTATGATCT GA
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Protein sequence | MRESPYPLER ELGMQFYATD TPGTGGTLRT VPDDFIVDEI PLEKKGSPSG PYLICRLTKT SWELQHAVKE IAKRLNISHR RIGWAGTKDR NARTTQLISI YKVTPEQVAA LHLRDITLEV LGQANEQLSL GDLTGNRFDI WIRDADPEDL DNRVVSVTEA AAIALPNYFG LQRFGVIRPL THRIGEYILR GEYEQAVATY VGQAFPLENE VARRARTVYW DTRDPAAALS DLPVAMSFER SMLSYLQAHP GDYPGALRQL PPKLLSMFVS AFQSYLFNYA LSHRLAAGHS LTGAVPGDRL IFANGRTDTA TAASSAAISL HLARGRCSIA LFMPGRDAAG APAGDEATQA MLADLGINQD HFRRASEFVQ TKFDGAWRPI ALRTPVETVV KDRDLRLRFT LPPGHYATTV CREYMKADPV RMI
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