| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_0655 |
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| Symbol | |
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| ID | 5410047 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Candidatus Methanoregula boonei 6A8 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009712 |
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| Strand | + |
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| Start bp | 622171 |
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| End bp | 623229 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640867874 |
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| Product | tRNA splicing endonuclease |
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| Protein accession | YP_001403816 |
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| Protein GI | 154150198 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1676] tRNA splicing endonuclease |
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| TIGRFAM ID | [TIGR00324] tRNA intron endonuclease
[TIGR00756] pentatricopeptide repeat domain (PPR motif) |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.524878 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCCCCCC TACGTCCTTA TTATACTGTA CTCCCAATAG TTCCTGCAGT GAAGGCGATA
TTTGACGGCA CCTCGGTGCT GACCGGAAAG GACGGGCGGA CTCTCTATGA CCAGAGCGGG
TACGGGCGCC CCGAGGGCGA GGGGATCCGC CTCGCGCCGC AGGAAGCTCT CTACCTTCTT
CATCGCCAGA AACTCGATGT TCCCGGGTAT ACCTTCGATT CGCTCCTTGC CGAGTATGCG
GATCAGCGCA ATTTCCTGCG CAGTTTCCTT GTGTACCGCG ATCTGCGCGA ACGCGGGTAC
GTAGTCCAGA CCGGGCCCCA TGATTTCCGC GTATTCCGGC GCGGGGAGAA ACCCGGGACC
GGCGAGTCGC TCTACCTGGT GCGGGTCCTC TCGGAACGGG ATCCGGTCCG GTTCACCAAA
CTCATAGAAG AGGTGGTCAC ATCAAGGAAC ATGCGCAAGC AGTACGTGCT CGCGGTTGTA
GACGACGAGG AGGAGCTCAC CTATTACGAG ATCAAGCTCC AGAAACTCGC CGATGCATCA
GTCCATGCGC CCCCTATTGC AAAGGCAGAA TCTGTTCTCG TGGGAAGATC TGCCATGATC
CGGGTACCCC TGCAATCGGA TCTTGAACGA GCCGGGTTTG GGAAGCGGCT TGATGACGAA
CGGCTCATGC TTGCCCCGGT AGAGCTGCTC TATCTCATGG ATTGCGGGGT CCTCAAGGCA
AAAAGGGACG GGGCTTTCAT CAGCACGGCA GATTATTTCG CATACGCCTC GGAGTCGGAT
CCGGAACTTG CCGCAAAGGA AAAAGTGTAC GCCGAGTTGC GCCGGCACGA TTTCACGCCC
CGGACCGGTT ACAAGTTCGG CCACCACTTC CGTGTCTACT GCGGGAAGAA CGTGCATTCC
GATCTCCTGG TGCATGCCAT TGAAAAGGAA GCCGTCATGC CTATCAGCGT GGTTTCACGG
TCAGTGAGGA TGGCGCATAG CGTCAAAAAG AAGATGTTGT TTGGCTGTGT ACATACTACC
GGTATCCAGT TCGTCGAATT TGCGCGGATC AAGTTATAA
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| Protein sequence | MSPLRPYYTV LPIVPAVKAI FDGTSVLTGK DGRTLYDQSG YGRPEGEGIR LAPQEALYLL
HRQKLDVPGY TFDSLLAEYA DQRNFLRSFL VYRDLRERGY VVQTGPHDFR VFRRGEKPGT
GESLYLVRVL SERDPVRFTK LIEEVVTSRN MRKQYVLAVV DDEEELTYYE IKLQKLADAS
VHAPPIAKAE SVLVGRSAMI RVPLQSDLER AGFGKRLDDE RLMLAPVELL YLMDCGVLKA
KRDGAFISTA DYFAYASESD PELAAKEKVY AELRRHDFTP RTGYKFGHHF RVYCGKNVHS
DLLVHAIEKE AVMPISVVSR SVRMAHSVKK KMLFGCVHTT GIQFVEFARI KL
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