| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A3492 |
|---|
| Symbol | |
|---|
| ID | 3624890 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | + |
|---|
| Start bp | 4478390 |
|---|
| End bp | 4479847 |
|---|
| Gene Length | 1458 bp |
|---|
| Protein Length | 485 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637702319 |
|---|
| Product | integral membrane protein |
|---|
| Protein accession | YP_306943 |
|---|
| Protein GI | 73670928 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0396785 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.244149 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACACTG GACCATTAAT CGGAAGCGAG GAGGCTGACG AATACTCATG GGACGAGAGG
GGAGAAAAAG AAGAAGTCCT TCAAAAAAGT ACAGAAGGAG TGAGTATTCT CCTCGGTGAT
CCCAGAAAAG CCGTTGTCAA GCTCTCAATT CCCATAATAG TTGCCATGTC TGTTCAGACG
ATATACAGCT TTACTGATAC CTTCTGGGTT TCCGGACTTG GAGCTGATGC CCTGGCTGCT
GTTGGATTTG CTTTTCCATT TTATGTAATC CAGATGGCAC TTACCGGCGG GTTAGGGGTT
GGAGGAGGAG CTGCAATTTC TCGACGCATA GGAGCCAGGG ATAAAGCAGG TGCGGATAAT
GTTGCAGTTC ATGCCTTCGT GATAATGCTC ATCCTCACAG TTGCTCTTAC TGCTCTTGGA
CTTGCATTTA TAAAGGAGCT TTTCATGTAC AGCGGAGCCG GAAAAACAAC CGAACTCGGA
GTCCAGTACG CCAGGGTGAT TTTTGCAGGC AGTTTTATTT TTTTCTTTAC AAATATTGCG
AATTCAATCC TGAGAAGTGA AGGAGATTCA AAAAGAGCTA TGAGATCCAT GGTTCTTGGC
TCAGGCCTTA ATATAGTGCT TGACCCCATT TTTATATACA TTCTGGGGCT TGGAATTGCA
GGGGCAGCCC TGGCTACAGT TATTTCTTTT GCCAGTTCGG GACTGCTGAT GTTCTACTGG
TTTTTTATTA AAAAAGATAC CTATGTTTCT TTCAGGTTTC GTTCTTTCAA ATTCGACAAA
TCAATTATCA GGGATATTTT CCGGGTAGGA ATTCCCTCAT CTATAGAGCA GTTTGCTCTG
GCGCTGACTG CCCTTATAAT GAACTTTGTT ATCGCAACCG TTGGCAGTAC GGACGGAGTT
GCAGTTTACG CTACAGCCTG GAGAGTAACA AGTATTGCAG TTGCTCCCAT TATAGGAATT
TCAATCGCTG TAGTCTCGAT CAGTGGGGCC GCTTTTGGAG AAAAAAATTT TAAAAAAGCA
CAGAATACCC TTATCTATGC AATTGAGGTC GGTTTTTTCG TAGAAACAAT AATTGCCGCT
GTAGTGTACC TTTTTGCTCA AGATATTGCT GCTGTCTTTA CACATACCGA AAATGCAGCC
CATATCGCTC CTGAGCTGAC AAGACTCCTT AAAATTATGA CGATTTTCTA TCCAGTCATC
ACTTTCGGAA TGCTCTCAGG TTCTCTCTTC CAGGGTGCAG GAAAAGGCAC AAACGCCCTT
GCTGCCACTC TTCTGCGGAG CCTTGTTATG ACTCTTTTAT TTTCCTTACT TTTTGCATTC
GGATTCGACT GGGGATTACT TGGAGTATGG TGGGGATTGG TTGTGGGCAC TGTAATTGGT
TCAGTGATTG CTTTTTTGTG GGTGCAGGTG TATTTGAAGT GTATGATAAA AGAGGAGGCG
GTGGAAAGGA AGTGCTGA
|
|---|
| Protein sequence | MNTGPLIGSE EADEYSWDER GEKEEVLQKS TEGVSILLGD PRKAVVKLSI PIIVAMSVQT
IYSFTDTFWV SGLGADALAA VGFAFPFYVI QMALTGGLGV GGGAAISRRI GARDKAGADN
VAVHAFVIML ILTVALTALG LAFIKELFMY SGAGKTTELG VQYARVIFAG SFIFFFTNIA
NSILRSEGDS KRAMRSMVLG SGLNIVLDPI FIYILGLGIA GAALATVISF ASSGLLMFYW
FFIKKDTYVS FRFRSFKFDK SIIRDIFRVG IPSSIEQFAL ALTALIMNFV IATVGSTDGV
AVYATAWRVT SIAVAPIIGI SIAVVSISGA AFGEKNFKKA QNTLIYAIEV GFFVETIIAA
VVYLFAQDIA AVFTHTENAA HIAPELTRLL KIMTIFYPVI TFGMLSGSLF QGAGKGTNAL
AATLLRSLVM TLLFSLLFAF GFDWGLLGVW WGLVVGTVIG SVIAFLWVQV YLKCMIKEEA
VERKC
|
|---|
| |