| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Maqu_1812 |
|---|
| Symbol | |
|---|
| ID | 4654645 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Marinobacter aquaeolei VT8 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008740 |
|---|
| Strand | - |
|---|
| Start bp | 2015498 |
|---|
| End bp | 2016067 |
|---|
| Gene Length | 570 bp |
|---|
| Protein Length | 189 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639811778 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_959081 |
|---|
| Protein GI | 120554730 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACTTGA TTAAGACCTG TGGTCTCTGT CTTTTGTTGT CAGTCGCGTT GTCCGGATGT
GTCACGGCCC CGACGCCGCC AGAATCTGAT CCTCAGGCTG AGCAGGCTGT CCTTGAGGTG
TCATTCAGCG AAGCGGTCAA GGCCATGAAG CAGGGCAACT TTACCGAAGC CCGGACCGTT
TTTGAACAAT TGGCCCGGAA CTATCCGGAC AAAGCCGGCC CCATGGCCAA CCTTGGCATC
ATTGCTTTCC GGGAAGGGGA CGCCGATGGC GCGAAAGAAT GGTTTGAGCG CGCGCGGGCA
GTCAATCCTG AGCATGTCCA GGCGTTGAAT CATCTGGGCG TGATTGCCCG AAATGCCGGA
GAATTCGATG AGGCGGAACG GTATTACCGA GCTGCGTTGG CGGCGGATCC GGATTACGCG
CCTGCGATTC TTAATCTGGC CTTCCTGCTG GATATCTATC TGGGTAACCC TGCCGATGCG
ATCGAACTCT ATGAGCGTTA TCAATCGGCT GCCAGCGAAC CGCACCCGAG ACTGGAAGAC
TGGATATTTG ATGCGAAAAA CAGGATCTGA
|
|---|
| Protein sequence | MNLIKTCGLC LLLSVALSGC VTAPTPPESD PQAEQAVLEV SFSEAVKAMK QGNFTEARTV
FEQLARNYPD KAGPMANLGI IAFREGDADG AKEWFERARA VNPEHVQALN HLGVIARNAG
EFDEAERYYR AALAADPDYA PAILNLAFLL DIYLGNPADA IELYERYQSA ASEPHPRLED
WIFDAKNRI
|
|---|
| |