Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_02045 |
Symbol | |
ID | 6775470 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | + |
Start bp | 2217474 |
End bp | 2218748 |
Gene Length | 1275 bp |
Protein Length | 424 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 642755480 |
Product | Site-specific recombinase XerD-like protein |
Protein accession | YP_002126341 |
Protein GI | 196156852 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.317068 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATAACT ATTTAAATCA ATACGTTACA AAATTATTTA TAATAGATAC AATCTTATTG AACGCGCTAC ATGCAGGCCA ATTCATGTCA TCTAAGCAAA AGATAACACA TTTACACCCC CATAAAGTGA AGCGGCAAGC GACAAGTGAT TCATTGGAAT ATAGCAATAA TAGCAGCCAC GCTTCCGGTT ATTACGATTC TGGTAGTGGC TCCACTAAAG GAGGTGTCAA TTCGCAACTC GTTTCGCCTT CACGTTCTTC ATCTACGCAT GATGTTGAAA GTTACTACCG AGAAATTTTT ACTAAGTTAC CGTACAACAC GCAACGTGCG TATATTAGTG ACTACAACGA ATTCGCAATT TTTTGTAAGC AGGCTAATCT GCAAGGCTTC ACCGACGATT TTAGCCACAA TGAATTATGT ATAAAGCAAT ATGTAGAAGA ATTGTGTCGT TCTCCCCTCG CCTACAGAAC GATTAAACGT CGTCTGTCTG CGCTCAGTAA ATTTTTAGGT GTTGCTAAAT TGCCTAACCC CATCATCCGT TCTGCCTATT TAAGAGATTT TATAAGACTG TCTCTTATTG AAAATAGAAA GTATCGTTTG ACACACAAAC AGGCTGTTCC GCTTACCATT GAAATGGTTG AACAAATAAA TAACGCTATT ATTCCCGACT CTTTGTTAGA ACTAAGAGAT ATTGCCATTA TTAACCTTAT GTTCGATGCC TTACTGCGTG CAGACGAATT AGTAAGAGTT TGTGTAGAAG ATATTTCTGC CAGGAATAAT ACATTGCTTG TGGTTTCTTC TAAGAGTGAT CAATCTGGAC AAGGTCAATA TAGGTATGTT TCCTCCAGTA CGGTTTCTAT GATCCAAGAG TATATAAATG AAGCAAATAC TTGCCCTAAA ACCAAACAAA CCCGACATGT TTCAGATTTA CGTGGGCTAC ACAAAGGCAT ACTTTTTCGA CGATTGACGA ATCATAAAAC GGCACTATTG CCCTTTGACG AACAAATACC AAGTCATAAA GCAAACGTTC TTAATTACTC AAGTGTCTAT CGTATTTGGC GACGCATTGC CCATCGTGCT GGAATTTCCG AAAATATTAC GCCACACAGT GGTCGCGTTG GCGGCGCAGT ATCGCTTGCA GAAGATGGCG CATCTTTACC CGAACTGCAG CTTGCCGGGG GCTGGCAATC TCCAGAAATG CCGGGGCATT ATACTAAACA AGCGAATGTA AAACGGGGCG GCATGGCGAA ATTGTCCGCC AAACGCAATC GATAA
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Protein sequence | MNNYLNQYVT KLFIIDTILL NALHAGQFMS SKQKITHLHP HKVKRQATSD SLEYSNNSSH ASGYYDSGSG STKGGVNSQL VSPSRSSSTH DVESYYREIF TKLPYNTQRA YISDYNEFAI FCKQANLQGF TDDFSHNELC IKQYVEELCR SPLAYRTIKR RLSALSKFLG VAKLPNPIIR SAYLRDFIRL SLIENRKYRL THKQAVPLTI EMVEQINNAI IPDSLLELRD IAIINLMFDA LLRADELVRV CVEDISARNN TLLVVSSKSD QSGQGQYRYV SSSTVSMIQE YINEANTCPK TKQTRHVSDL RGLHKGILFR RLTNHKTALL PFDEQIPSHK ANVLNYSSVY RIWRRIAHRA GISENITPHS GRVGGAVSLA EDGASLPELQ LAGGWQSPEM PGHYTKQANV KRGGMAKLSA KRNR
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