| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | M446_3693 |
|---|
| Symbol | |
|---|
| ID | 6135031 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium sp. 4-46 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010511 |
|---|
| Strand | - |
|---|
| Start bp | 4118780 |
|---|
| End bp | 4120279 |
|---|
| Gene Length | 1500 bp |
|---|
| Protein Length | 499 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | 641643864 |
|---|
| Product | phytoene desaturase |
|---|
| Protein accession | YP_001770508 |
|---|
| Protein GI | 170741853 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
|---|
| TIGRFAM ID | [TIGR02734] phytoene desaturase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00357896 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGACGGACG AACGGGTGGT GGTGATCGGG GCGGGAATCG GCGGGCTGGT GGCGGCCCTC
GGCCTTTCGG CCGCGGGCCT GAACGTCACC GTGGTGGAGA AGGCGGCCGC GCCGGGCGGC
AAGATGCGCG CGGTGGCGGC CGGCCCGCGC CGGGTCGAGG CCGGCCCCAC GGTCTTCACC
ATGCGCTGGG TGTTCGAGGA GATCTTCTCC GAGGCGGGCG CCGACCTCGC CGCCCGGGTC
TCGCTGACGC CGGCCGGCAT CCTGGCGCGG CACGCCTGGA GCGCGGGGGA GCGCCTCGAC
CTCTTCGCCG ACCCGGCCCG CTCGGAGGCG GCGATCGCGG ATTTCGCCGG CCCCCGGGAG
GCGGAGGGGT TCCGCCGCTT CCGCGCCCGC GCGGCCGAGA TCTACCGCAC CCTCGAGACC
CCCTTCATCC GCGAGCCCCG CCCGAACCCG CTGGAACTCG CCCTGCGGGT CGGGCCCCGG
GGCCTCGGCG ACCTCTGGCG CATCCAGCCC TTCGCGACGC TCTGGACCGC GCTCTGCGCG
CATTTCCGCG ACCCGCGCCT GCGCCAGCTG TTCGGGCGCT ACGCGACCTA TTGCGGCTCC
TCGCCCTTCG AGGCGCCCGC GACCCTGATG CTGGTCGCGC ACGTGGAGCA GGAGGGGGTC
TGGACGATCG CCGGCGGGCT GTCGCGCCTC GCTGCCGCCG TGGCGGAGCT CGCCGCCGAG
AAGGGCGCCG CCCTGCGCTA CGGGGCCGAG GCGACCGGGA TCGTCACGGC GGGCGGGCGC
GTCGCCGGGG TCGCCCTGGC GAGCGGCGAG CGCCTCCCGG CGACCCGCGT CGTCGCCAAC
GCGGACGTGG CGGCCCTCGC CGCGGGCCTG TTCGGGCCGG AGGCGGCGCG GGCGGTCGAC
CCGGTCCCGC GCGAGGCGCG CTCGCTCTCG GCGGTCACCT TCGCGGTGGC CGGCCGCCCG
GACGGCTTCC CCCTGGTGCG CCACAACGTG TTCTTCTCGC GCGACTACCA GAGCGAGTTC
GTGGACCTGA CCCGGCGGCG GCGCCTGCCG GAGGACCCGA CCGTCTACGT CTGCGCCCAG
GACCGCGGCG ACGACGGCGT GCCGGAGACG GGCCGGGGCC CGGACCACGC GCCGGAAGCC
CTGCTCGCCC TCGTCAACGC GCCCGCCCGC GACGAACCCT TTTCCCCGCA GGAGATCGCC
CGATGCCACG CCACGATGAG CCGGCGGCTG TCCGCCTGCG GCCTGACGCT CGCGCCGGAG
GCCGAGACGG TGACGGCGCC GCCGGATTTC GCGACGCTCT TCCCGGGGAC CGGGGGGGCG
CTGTACGGCC GGGCCTCGCA CGGCTGGACG GCGTCCTTCC GCCGGCCGGG GGCGCGCACG
CGGCTGCCGG GCCTCTACCT GGCGGGGGGG AGCGCGCATC CGGGGCCGGG CGTGCCGATG
GCAGCCCAGT CGGGCCGGCT CGCGGCGCGG CAGGTGCTGC GGGACCTCGC TTCGACCTGA
|
|---|
| Protein sequence | MTDERVVVIG AGIGGLVAAL GLSAAGLNVT VVEKAAAPGG KMRAVAAGPR RVEAGPTVFT
MRWVFEEIFS EAGADLAARV SLTPAGILAR HAWSAGERLD LFADPARSEA AIADFAGPRE
AEGFRRFRAR AAEIYRTLET PFIREPRPNP LELALRVGPR GLGDLWRIQP FATLWTALCA
HFRDPRLRQL FGRYATYCGS SPFEAPATLM LVAHVEQEGV WTIAGGLSRL AAAVAELAAE
KGAALRYGAE ATGIVTAGGR VAGVALASGE RLPATRVVAN ADVAALAAGL FGPEAARAVD
PVPREARSLS AVTFAVAGRP DGFPLVRHNV FFSRDYQSEF VDLTRRRRLP EDPTVYVCAQ
DRGDDGVPET GRGPDHAPEA LLALVNAPAR DEPFSPQEIA RCHATMSRRL SACGLTLAPE
AETVTAPPDF ATLFPGTGGA LYGRASHGWT ASFRRPGART RLPGLYLAGG SAHPGPGVPM
AAQSGRLAAR QVLRDLAST
|
|---|
| |