Gene Lreu_1508 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLreu_1508 
Symbol 
ID5189173 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLactobacillus reuteri DSM 20016 
KingdomBacteria 
Replicon accessionNC_009513 
Strand- 
Start bp1559942 
End bp1560634 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content41% 
IMG OID640591358 
Producthypothetical protein 
Protein accessionYP_001272090 
Protein GI148544720 
COG category[S] Function unknown 
COG ID[COG1814] Uncharacterized membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.00139077 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTATTA AGGTGAAAAA ACATCAGAAG CAAACAATGG AAGAAAAACT GAATACGTTA 
CGAGCAGGGG TACTAGGTTC AAATGATGGC ATTCTGACTG TTGTCGGTGT TTTGGTATCG 
GTAGCAGCAG CGACAAGTGA CCGTTTTACT ATCTTCATTG CTGGCTTATC TGATTTGCTT 
GCCTGTGCAT TTTCAATGGC TTCTGGCGAA TATGCCTCTG TATCTACTCA AAAGGATACG 
GAAAAAGCGG CCGTTGCTAA AGAAGAGCGG CTCTTAAAAA TCGATTATGA AGGGGAACTT 
GCGGCAGTAA AAGACTATTA TGTAAATAAA GGAGTTACCC CTGAAACATC AATCAAAATT 
GCTAAAGACC TCCTTAATAA AAAGCCCCTT GAGACGGTTG TTCGGATTAA GTATGATATT 
GAGCTTGGTC ACTATCTTAA CCCTTGGGAT GCGGCATTTT CTTCTCTTTT TTCAGCAGCT 
GCTGGAGGCT TGATTCCGTT GATGGCGATG ACTTTTGCTC CCGAAGCATA TAAGTGGTAT 
GCCGTGATTT TAGCGGTTGC TTTTACGAGC GCTCTAACCG GTTATATCAG TTCTAAACTC 
GGGAACGGGC TTGTAAAAAT TGCAGTTATT CGAAATATTA TTATTGGTTT GATTACGATT 
ACGATTCACT ATGGAGTCGG AAAATTATTT TAA
 
Protein sequence
MSIKVKKHQK QTMEEKLNTL RAGVLGSNDG ILTVVGVLVS VAAATSDRFT IFIAGLSDLL 
ACAFSMASGE YASVSTQKDT EKAAVAKEER LLKIDYEGEL AAVKDYYVNK GVTPETSIKI 
AKDLLNKKPL ETVVRIKYDI ELGHYLNPWD AAFSSLFSAA AGGLIPLMAM TFAPEAYKWY 
AVILAVAFTS ALTGYISSKL GNGLVKIAVI RNIIIGLITI TIHYGVGKLF