| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_1015 |
|---|
| Symbol | |
|---|
| ID | 5188285 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus reuteri DSM 20016 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009513 |
|---|
| Strand | + |
|---|
| Start bp | 1066540 |
|---|
| End bp | 1067187 |
|---|
| Gene Length | 648 bp |
|---|
| Protein Length | 215 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 640590854 |
|---|
| Product | thiamine-phosphate pyrophosphorylase |
|---|
| Protein accession | YP_001271612 |
|---|
| Protein GI | 148544242 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0352] Thiamine monophosphate synthase |
|---|
| TIGRFAM ID | [TIGR00693] thiamine-phosphate pyrophosphorylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 45 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATATTTG ATCCAAAAAT GTTACAAGTA TACTTAGTTG GTGGAACACA AGATGTTCAT
AATGACGTTG TTAAATTTCT CGAAAAAGTG GAGCTAGCAA TGAAGAGTGG TATCACCGCC
TTCCAATATC GAGAAAAAGG AAACTCGAAG TTACGGCCTA ATGAACGAGT AGACTTAGGA
CTAGAATTAC GGACCTTATG TACGCACTAT GGAATTCCAT TGATTGTTGA TGACGACTAT
GAATTGGCCC AGCAAATTAA CGCTGATGGG GTTCACGTTG GGCAAAATGA TACTAAGATT
GAACAGGTAT CTGTCGCCGT AGGTCATCAG ATGTTCATTG GCTACTCCTG TAATACACCA
GAACAAGTTG AACGTGCTAA TACAATGGAC TTTATTGATT ATATCGGTTG TGGTCCTGTT
TTCCCTACAA AATCAAAGTC TGACGCCGAT ACTGCTATTG GGATCAATCG TCTTGAACGT
TTAAACATGA TCAGTGAGCG TCCTGTAGTT GCAATTGGGG GTATCGATGA AGAAAATATG
AAAGTTGTTC ACGACACTGG AGTTGCAGGT CTAGCTGTTA TTTCCTTAGT CTTTGATAGC
AAGGATCTTG TAGCAACTGT AAAGAAAATG AAGAATTTGT ATAAATAA
|
|---|
| Protein sequence | MIFDPKMLQV YLVGGTQDVH NDVVKFLEKV ELAMKSGITA FQYREKGNSK LRPNERVDLG
LELRTLCTHY GIPLIVDDDY ELAQQINADG VHVGQNDTKI EQVSVAVGHQ MFIGYSCNTP
EQVERANTMD FIDYIGCGPV FPTKSKSDAD TAIGINRLER LNMISERPVV AIGGIDEENM
KVVHDTGVAG LAVISLVFDS KDLVATVKKM KNLYK
|
|---|
| |