| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_0580 |
|---|
| Symbol | |
|---|
| ID | 5189773 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus reuteri DSM 20016 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009513 |
|---|
| Strand | + |
|---|
| Start bp | 649571 |
|---|
| End bp | 650080 |
|---|
| Gene Length | 510 bp |
|---|
| Protein Length | 169 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 640590415 |
|---|
| Product | RNA methyltransferase |
|---|
| Protein accession | YP_001271184 |
|---|
| Protein GI | 148543814 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0219] Predicted rRNA methylase (SpoU class) |
|---|
| TIGRFAM ID | [TIGR00185] rRNA methylase, putative, group 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 49 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAACC ATATTGTCTT GTTTGAACCA TTATTTCCAG CGAATACGGG AAATATTGCA
CGAACTTGTG CGGGGACAAA TACTGAATTA CATTTAATCA AGCCATTAGG ATTTTCAACT
GATGATAAGC ATATGAAACG GGCTGGATTA GACTACTGGG ATAAAGTAAA GATCACGTAT
CATGAGGATT TACCTTCATT TATGAAAACT ATTCCTGATA TTAACCGTTT ATATATTGTT
TCTAAGTTTG CTACCCATGA TTATAGTGAT GTTGATTATA CGGGTGAAGG AGATCATTAT
TTCCTATTTG GAAAAGAAAC AACTGGCTTG CCCGAACGTT TTATGCAAAA ATATCCAGAA
AATGCTATCC GGATTCCTCA AAATGACAAT AATATTCGGG CCCTAAATTT ATCAAACAGT
GCAGCGATTG TTATTTATGA GGCATTGCGG CAACAGAATT TTCCTAATTT AGCACGCGTT
CATAAATATG AATTTGATAA ATTAAAGTAA
|
|---|
| Protein sequence | MTNHIVLFEP LFPANTGNIA RTCAGTNTEL HLIKPLGFST DDKHMKRAGL DYWDKVKITY
HEDLPSFMKT IPDINRLYIV SKFATHDYSD VDYTGEGDHY FLFGKETTGL PERFMQKYPE
NAIRIPQNDN NIRALNLSNS AAIVIYEALR QQNFPNLARV HKYEFDKLK
|
|---|
| |