Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_1534 |
Symbol | |
ID | 6877509 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | - |
Start bp | 1490013 |
End bp | 1491545 |
Gene Length | 1533 bp |
Protein Length | 510 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642789397 |
Product | FAD dependent oxidoreductase |
Protein accession | YP_002219963 |
Protein GI | 198283642 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.419811 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.0375492 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCGGCTA ACCTCGACGC CGATGTGATC ATCATCGGCA GCGGCGCCGG CGGCGGCACC CTGGCCCGCG CCCTCGCCCC ATCAGGACTG TCCATCCTCA TCCTCGAACG CGGCGACTAC CTCCCCCGCG AATGGGGCAA CTGGGACCCA CACACCGTCT TTGCCGAACA CCGCTACCAT ACCCCTGAAC AGTGGCACGA TGGCGACGGC CAGATTTTCA CCCCCGTTAC CGGCTATCAT GTGGGGGGCA ACACCAAGTT CTACGGGGCG GCCGTTTTGC GCCGGCGCGA AAAAGATTTC CTTCCCCGTC ACCATCGCGA CGGCCTCACC CCCGCCTGGC CCATCGCCTA CGCCGATCTC GCGCCCCACT ATGACCAGGC CGAGGCCTGG TACTTCACCC ACGGTCAGGC CGGTGCCGAT CCCCTGGAAC CGCCCCGCGG TCCCTTCGCC TTCCCCCCTT TCCCCCACGA GCCCCTCCTC GCAGCCCTGG AGCAAAAATT GCGGAATATG GGGTTGCACC CCTTTCCCCT CCCCCTCGCC CTCCACCGCA ACGAGGAAGA CCCCGCCCAT AGCCCTTGCG TGCGTTGTCC CACCTGTGAC GGCTTCCCCT GCCTGCTGCA CGCCAAGGGC GATGCCGAAG TCTGCGGTGT CACCCCCGCC CTGGCCCACG CCAACGTCCG CCTGCTCACC CGGCATCGCG TCCTGCGCCT GCTGCCTGGC GGCGACGGCA GGGGTGTGGA AGGTGTGGAA ACCGATCAGG GCACCCTGCG CGCCCGCGTC GTCGTCCTTG CCGCCGGCGC CGTAAACTCC GCCGCCCTCC TCCTCGCCTC CGCCGATGCC GCCGCGCCCC AAGGTCTCGC CAACAGCAGC GATCAGGTCG GGCGCAACTA CATGTGCCAT CTCAATAGCG CCTGCATGGC CCTCAAAGCC GCCCAGGAAA ACACCACCGT CTTCCAGAAA ACCCTGGCCA TCAACGATTT TTACGACGAC TCGGGCGACC CCGATTATCC CTATCCCCTC GGCCACATCC AGAATCTCGG CAAGGTCACG CCGGCGCTGC TCCATGCCCA ACAGCCCCTG CTCCCCATTC CCCTCGTCGC CTGGACCGCC AGCCACTCCG TGGACTGGTG GCTCACCACC GAAGACCTGC CCGACGCCGG CAACCGGGTC ACCCTCGACA GCGACGGCCA TATCCGCCTC GCGTGGCAAC CCAAAAACCG CGAAAGCCAC CAGCGCCTCT GTGACCAATG GCGCAAGATT CTCCACCAGG CCGGCTTTCC CATGGTCTTC TTTCAGGCCA TGGACATCTC CGCCACTGCC CATCAGGTGG GCACCTGCCG TTTTGGCGAA GACCCTGCGG ACAGTGTCCT GGATCCCTGG TGCAGGGCCC ATGACCTCGC CAACCTCTAT GTCGTGGACG CCTCCTTCAT GCCCTCCATC AGCGCGGTCA ACCCCTCCCT CACCATCATG GCCAATGCCA TCCGCGTCGC CGCGCATCTG GCCGAACGCT TCAAAACAGG GGCCTGGGCG TGA
|
Protein sequence | MAANLDADVI IIGSGAGGGT LARALAPSGL SILILERGDY LPREWGNWDP HTVFAEHRYH TPEQWHDGDG QIFTPVTGYH VGGNTKFYGA AVLRRREKDF LPRHHRDGLT PAWPIAYADL APHYDQAEAW YFTHGQAGAD PLEPPRGPFA FPPFPHEPLL AALEQKLRNM GLHPFPLPLA LHRNEEDPAH SPCVRCPTCD GFPCLLHAKG DAEVCGVTPA LAHANVRLLT RHRVLRLLPG GDGRGVEGVE TDQGTLRARV VVLAAGAVNS AALLLASADA AAPQGLANSS DQVGRNYMCH LNSACMALKA AQENTTVFQK TLAINDFYDD SGDPDYPYPL GHIQNLGKVT PALLHAQQPL LPIPLVAWTA SHSVDWWLTT EDLPDAGNRV TLDSDGHIRL AWQPKNRESH QRLCDQWRKI LHQAGFPMVF FQAMDISATA HQVGTCRFGE DPADSVLDPW CRAHDLANLY VVDASFMPSI SAVNPSLTIM ANAIRVAAHL AERFKTGAWA
|
| |