| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4272 |
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| Symbol | |
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| ID | 6161220 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4780777 |
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| End bp | 4781304 |
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| Gene Length | 528 bp |
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| Protein Length | 175 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641667049 |
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| Product | tripartite ATP-independent periplasmic transporter DctQ |
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| Protein accession | YP_001793288 |
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| Protein GI | 171060939 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATGCTG TCGAACGAAA CCCGGTCGAA CGAGGCGTGG TGGGCCTGTG CCGTGGGGTG
CTGTGGTTGA GCACGGCCAC CATCTTCGTG ATCCTGGTGG CCAACACGGT GCTGCGCTAC
GCCCGAGGGT CCAGCCTGCA ATGGGCCAAC GAGGTGCCTG AGCTGCTGTT CCCCTGGCTG
GTGATGGCCG GCGTGGTGAT GGCGGCGGTG CACAGCGCGC ACATCGCCAC CACCTTCCTG
ATGGAGGCCG TGCCGGCTGC CGTGCGGCGC GGGGTCGGGG TGGTGAGCTG GCTGGTGGTG
GCGGGCCTGT ACGGCACGCT GGCCATCGCG ACGTTTCGCA TGCTCGACAT CGTGCACGAC
GAGACCTCGC CGATCCTGCA GGTGCCCGGC TCGCTGACCT ACGCCTGCGT GATGGCCGGC
ATGGCCCTGC TCGCCTTGCT GGCACTGCAG TCGGCCTGGC AGGTCTGGCG CAGCTCGACC
GAGCCCGTGC CGAACGCCGA ACCCAGCGTG CCGACGGCGC ATTGGTGA
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| Protein sequence | MNAVERNPVE RGVVGLCRGV LWLSTATIFV ILVANTVLRY ARGSSLQWAN EVPELLFPWL
VMAGVVMAAV HSAHIATTFL MEAVPAAVRR GVGVVSWLVV AGLYGTLAIA TFRMLDIVHD
ETSPILQVPG SLTYACVMAG MALLALLALQ SAWQVWRSST EPVPNAEPSV PTAHW
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