| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4171 |
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| Symbol | |
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| ID | 6162399 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4676357 |
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| End bp | 4679200 |
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| Gene Length | 2844 bp |
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| Protein Length | 947 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641666948 |
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| Product | helicase domain-containing protein |
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| Protein accession | YP_001793187 |
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| Protein GI | 171060838 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 63 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGACCCCCT ATCAAACCCA ATACAGCGCC TGGCAGCTGT CGCGCCGCAT CGGGCCGGAT
GACGCCGACC TGTTGGCCGC CACGCTGGTC GATGCGCAGA TCGACCTGAA CCCGCACCAG
GTCGACGCGG CGCTGTTCGC GTTTCAAAGC CCGTTGTCCA AAGGCGTCAT CCTGGCCGAT
GAGGTCGGCC TCGGCAAAAC CATCGAGGCC GGCCTGGTCA TCGCCCAGCG CTGGGCCGAG
CGCAAGCGGC GCATCCTCGT CATCGTGCCC GCCAACCTGC GCAAGCAGTG GCATCAGGAG
CTGCAGGAAA AGTTCAGCCT GCAGGCGCTC ATTCTGGAAG CGGGCAGCTA CAAGCAACTC
AAGAAGGACG GCCTGCGCAG CCCGTTCGAG CCGGCCAGCC GCATCGTCAT CTGCTCGTAC
CAGTTCGCCA AGTCGCGCGC TGACGACCTC AAGCGTGTGC CGTGGGATCT TGTCGTCATG
GACGAAGCGC ATCGCCTGCG CAACGTCTAC AAGACCAGCA ACGTCATTGG CAAGGCACTC
AAGGAAGCGC TGGCCCATGC GCCCAAGGTG TTGCTGACCG CCACGCCGCT GCAGAACTCG
CTGCTGGAGT TGTATGGCCT GGTCAGCCTG GTTGACGAGC GGGTGTTTGG CGATCTGCCC
AGCTTTCGGG ACCAGTTCGG CGGCCTGGGC AACGCGGACA CTTTTGCCAA GCTGCGGGCC
CGGCTGCAGT CGGTGTGCAA GCGCACCTTG CGGCGCCAGG TGCAGCCTTA CATCTCGTAC
ACGCGCCGCA TCCCGATGGT GGAACAGTTC ACGCCCTCAC CGGATGAACA GGTGCTGCGC
GGGCTGGTGG CCGACTACCT GCGCCGCCCG GTCCTCAATG CCCTGCAGTC CGGCCAGCGG
CAGCTGATCT CGCTGGTGCT GTGGAAGCTG CTCGCTTCCA GCAGCTATGC AATTGGCGGT
GCCCTGGGCA CCATGGCCAA GCGGCTCGAA CGCCAACTCG CCGCCCAGCC CGAGGCCGAA
CTCGTCGACA CGCTGGACCA GGACTACGAA GCCCTCGCCG AGACCGAAGA GGAATGGTCC
GAAGCTGATA CCGATCCGTC CGCCGAGCAG CTGGCCAGCA CGGCCGAAGA AAGCGTCGAG
CTGCGCGAAT ACCAGCGCCT GGCCACCACC ATCCGCGACA ACGCCAAAGG CCAGGCGCTG
CTCAAGGCGC TGGGCAAAGC CTTTGCCGAG CTGCAAAGGC TGCAGGCCAA CAAGAAGGCG
CTGATCTTCA CCGAGTCCCG CCGCACGCAG GACTACTTGC TGAGCCTGCT GGAGCAGAGC
CCTTACGCCG GCCAGATCGT GCTGTTCAAC GGCACCAACA CCGGTGCACA AGCCCAGCGC
ATCCATGCCG ACTGGCTCAA GCGCCACGCC GGCACCGACC GCATCACCGG CTCGCGCACC
GCAGACACCC GCGCCGCGCT GGTGGAGCAC TTTCGCGACT CCGCGCAGAT CATGATCGCC
ACCGAAGCTG GAGCCGAAGG CATCAACCTG CAGTTCTGCT CGCTGGTCAT CAACTACGAC
CTGCCGTGGA ACCCCCAGCG CATCGAACAG CGCATCGGCC GCTGCCACCG CTACGGCCAG
CAGCACGACG TGGTGGTGGT CAACTTCATC GACCTCAGCA ACCCCGCCGA CCAGCGGGTG
TACGAGTTGC TGGCGCAGAA ATTCCAGCTG TTCGAAGGCG TGTTTGGCGC CAGCGACGAG
GTGCTCGGCA CGATCGGCAG TGGCGTGGAT TTCGAGCGCC GCATCGCCGA GATCTACCAG
ACCTGCCGCA ACCCGCAGGA GATCGAAGGT TCGTTCCAGC AGCTGCAGCT CGACCTGTCG
GGCGAGATCA ATGCCGCCAT GCTCAAGACC CGGCAGCTGC TGCTGGAGAA CTTTGACGAA
GCCGTGCAAG ACAAGCTCAA GTTGCGGCAG AACGAAAGCA CCAGCGCCCG CAACCGCTAC
GAGCGCTTGC TGATGGACCT GACCCGGGCG GAGCTGCAGG GCCACGCCGA GTTTGACGAC
GCCGGTTTCA CCCTCACGCA AACACCCCAC GGCCTCTCGC CCCAAGACGC ACCACCCGGG
CGCTACGAAT TGCCGCGCCG CAGTGGCGAG GCGCACCTCT ATCGCACGGG TCATCCGCTC
GCACAGGCGC TGATCGAGCA GGCGCGAGGG CGCAAACTGC CTGCCGCCAA ACTGCGATTC
AACTATGACG GATACCGCCT CAAGGTTTCC ACGCTCCAAA CCCTGCGAGG CCAAAGCGGC
TGGCTGGCCT TGAGCGTGAT GACCATCGAA GCCATGGACA CGGCCGAGGA CTATCTGCTG
CTGGCTGGCG TGACGGCCGA TGGCAGCCCC TTGCACGACG AGGATGCCGA AAAGCTGCTG
CGCCTGCCGG CTCAGGTGCA GAAAAGCGAC TCGCCGACCC GGCCGCCGGA CAGCTTGGAC
AGAGAAACCC TGCGGCTCGA AGCGCTGCAC ACGACTGCAG TCAATAGTCG CAACCTGGGG
TACTTCGATA CCGAGGTGCA GAAGCTGGAC GCTTGGGCCG ACGATCTGAA AAACGGCCTC
GAAAACGAGG TCAAGGAAAT CGATCGTGAA ATCAAGGATG TTCGGCGGTC TGCCTCAGTG
GCCGCGACGC TGGACGAAAA GCTTCATTGG CAAAAACGCC AGCGGGAACT GGAAGAAAGT
CGCAATCGGT TGCGTCGCCG GATCTTTGAC CGGCAGGATG AAATTGACGG CCAACGTAGT
CAGCTCATCA TTGAGCTTGA GGCCCGGTTG TCACGGAACG CGTCTTTGAA AGACATATTC
ATAATCCAAT GGGAGTTGGA CTGA
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| Protein sequence | MTPYQTQYSA WQLSRRIGPD DADLLAATLV DAQIDLNPHQ VDAALFAFQS PLSKGVILAD
EVGLGKTIEA GLVIAQRWAE RKRRILVIVP ANLRKQWHQE LQEKFSLQAL ILEAGSYKQL
KKDGLRSPFE PASRIVICSY QFAKSRADDL KRVPWDLVVM DEAHRLRNVY KTSNVIGKAL
KEALAHAPKV LLTATPLQNS LLELYGLVSL VDERVFGDLP SFRDQFGGLG NADTFAKLRA
RLQSVCKRTL RRQVQPYISY TRRIPMVEQF TPSPDEQVLR GLVADYLRRP VLNALQSGQR
QLISLVLWKL LASSSYAIGG ALGTMAKRLE RQLAAQPEAE LVDTLDQDYE ALAETEEEWS
EADTDPSAEQ LASTAEESVE LREYQRLATT IRDNAKGQAL LKALGKAFAE LQRLQANKKA
LIFTESRRTQ DYLLSLLEQS PYAGQIVLFN GTNTGAQAQR IHADWLKRHA GTDRITGSRT
ADTRAALVEH FRDSAQIMIA TEAGAEGINL QFCSLVINYD LPWNPQRIEQ RIGRCHRYGQ
QHDVVVVNFI DLSNPADQRV YELLAQKFQL FEGVFGASDE VLGTIGSGVD FERRIAEIYQ
TCRNPQEIEG SFQQLQLDLS GEINAAMLKT RQLLLENFDE AVQDKLKLRQ NESTSARNRY
ERLLMDLTRA ELQGHAEFDD AGFTLTQTPH GLSPQDAPPG RYELPRRSGE AHLYRTGHPL
AQALIEQARG RKLPAAKLRF NYDGYRLKVS TLQTLRGQSG WLALSVMTIE AMDTAEDYLL
LAGVTADGSP LHDEDAEKLL RLPAQVQKSD SPTRPPDSLD RETLRLEALH TTAVNSRNLG
YFDTEVQKLD AWADDLKNGL ENEVKEIDRE IKDVRRSASV AATLDEKLHW QKRQRELEES
RNRLRRRIFD RQDEIDGQRS QLIIELEARL SRNASLKDIF IIQWELD
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