Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_4005 |
Symbol | |
ID | 6160516 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 4488468 |
End bp | 4489028 |
Gene Length | 561 bp |
Protein Length | 186 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641666785 |
Product | LemA family protein |
Protein accession | YP_001793024 |
Protein GI | 171060675 |
COG category | [S] Function unknown |
COG ID | [COG1704] Uncharacterized conserved protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0000000752628 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | TTGCCATCGC GTCTCGTGCT GATCGTCCTG GCGACGATCC TGGGTCTGTG GACACTCGGC GCCTACAACC GCCTGGTGCG CCTGCGCAAC AGCATGCGCA CGGCGTTTGC GCCGCTGGCC AGCCAGCTGC GGCAGCGCCA TGCCGTGGCG TTGACGCTGG CCGAGGTCTC GCGCACCCGC ATCACCGAGC CGCAGGATGA AGCGCTGATC GAAGCCACGC TGACGTCCGC CAGCCAGGCC GGTCGCGCCA GCGACAACGT CCAGCAGCGC CCCCTGCGCG GCGACGTGCT GCAGCAGCTG GCGATTGCCG AGGAGGTGCT GGTGGCCGCG CTCGACGAGC TCGGCCACGC CCTGCAGGAC CTCACGTCCG GCATCGGCCC CGACCCGGTC GTCAGCGACC TGCTGCGCCA GCGTGATGCG CTGCAGGAGC AGATCGCCTT TTCGCGGCTG GTCTACAACC AGTCGGCCGA CGAATACAAC CGCGCGGTGG CCCTGTTTCC GACCACGCTG GTGGCCGGCC TGTTCGGCTT CCATGCCGCG CCCGAGTTCC CGCCGATCTG A
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Protein sequence | MPSRLVLIVL ATILGLWTLG AYNRLVRLRN SMRTAFAPLA SQLRQRHAVA LTLAEVSRTR ITEPQDEALI EATLTSASQA GRASDNVQQR PLRGDVLQQL AIAEEVLVAA LDELGHALQD LTSGIGPDPV VSDLLRQRDA LQEQIAFSRL VYNQSADEYN RAVALFPTTL VAGLFGFHAA PEFPPI
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