Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3301 |
Symbol | |
ID | 6162212 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 3668659 |
End bp | 3669534 |
Gene Length | 876 bp |
Protein Length | 291 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641666076 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_001792324 |
Protein GI | 171059975 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0395] ABC-type sugar transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCACC CCATGATGCC CACGCTGGCA CGCCGCGCGC TGCACTACGT GCTGCTGAGC TGGATCGCGC TGATCTTCAT CTTCCCGATC GTCTTCATGA TCGTGTCGTC GCTCAAGCCC GACCTGCAGC TGCTGCAGGA CGCCAGCTCG CTGCGCGCCT TCCTGCCGGT GGGCGACATC TCGCTCGACA ACTACCGCGC GGCCTTCCAG CGCGTGCCGA TCGGCCACTT CATCGTCAAC TCGGTGATGG TCACGGCGAT CACGATGGTG CTGTCGCTGG CGATCTGCTC GATGGCGGCG TTTGCCTTCG TGTTCCTGGA GTTCCCGGGC CGCAACCTGC TGATGGCGGT GGTGCTGGCC ACCTTCATCG TGCCCTTCGA GTCGATCGCC ATCCCGCTGC TGCTGGTGGT CAACAACCTG CCGTGGATCG GCGCGGACGG CCTCACGATC GGCTGGCTCA ACTCGTACCA CGTGCAGATC ATCCCGTTCG TGTCGGACGC GCTGACGATC TACCTGTTCG TCCAGTACTT CCGCGACCTG CCGCGTGATC TGGTCGAGGC CGCCCGCGTC GACGGCGCGA GCTACTTCCA GATCTACCGC CGCGTGATCG TGCCGCTGGC CGGCCCGGTG TTCGCGACCG CCGCGATCCT GAAATTCCTC GCCATGTACA ACCAGTACCT GTGGCCGGTG ATGTCGGCCC AGTCGGAGGA CTACCGCCCG ATCATGGTCG GCCTGCAGTA CTTCTTCCAG CTCAACATCG CCTGGGGCGA AATGATGGCC TACCTGACCG TCATCACGGT GCCGGTGCTG CTGTTCTACC TGAGCCTGCA GCGCGCGTTC ATCGCCTCGA TCGCCTCCAC CGGGGTCAAG GGTTGA
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Protein sequence | MSHPMMPTLA RRALHYVLLS WIALIFIFPI VFMIVSSLKP DLQLLQDASS LRAFLPVGDI SLDNYRAAFQ RVPIGHFIVN SVMVTAITMV LSLAICSMAA FAFVFLEFPG RNLLMAVVLA TFIVPFESIA IPLLLVVNNL PWIGADGLTI GWLNSYHVQI IPFVSDALTI YLFVQYFRDL PRDLVEAARV DGASYFQIYR RVIVPLAGPV FATAAILKFL AMYNQYLWPV MSAQSEDYRP IMVGLQYFFQ LNIAWGEMMA YLTVITVPVL LFYLSLQRAF IASIASTGVK G
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