Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2465 |
Symbol | |
ID | 6162558 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 2677422 |
End bp | 2678132 |
Gene Length | 711 bp |
Protein Length | 236 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641665235 |
Product | phage shock protein A, PspA |
Protein accession | YP_001791495 |
Protein GI | 171059146 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG1842] Phage shock protein A (IM30), suppresses sigma54-dependent transcription |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.000000493409 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCCAACA ACGCAATCTT TGCCCGCCTC GCCAACCTGT GGTCGGGGTT CATCTCACTG TGGGTGTCCG ACGTCGAGAA GGCCCATCCG GAGATCGCGT ACCAGAACGC GATCGCCTCG ATGATCGAGA AGTACACCCA GCTCAAGGCC GCGACCGGTG CCATCATCGC GCGCCGCCAG GAGATCACCG CGCGGCTGGA GGCGCAGGAG CGCGAGCTGG CCAGCGTCAG CGCCGACCTC GAGACCGCGT TGGCCACCAA CCAGGACGAC CTGGCCGTGG TGCTGATCCA GAAGAAGAAC GCGGTCGATG CGGCGCTGGT CGAACTGCGC GCCGATGCCG CCCAGGCCAC CTCGGATGCC GACACCGCCA AGGATTCGCT GATGCAGGTG AAGTCCGAGA TCGACAAGCT CAAAGCCGAG AAGGACCGCA TGCTCGCGCA GATGCACAGC GCGCAGGCGC GGCTGAAGAT CCAGGGCCAG CTCGACGGCC TGTCGGTCGA CGCCGAGGTG CAGGCGCTGG GTGCCGTGCG CGACCACATC AAGAGCCAGG TGGCGCAGGC CAGCCTGGGC GCCGAGCTGC GCGAATCCGA CCTCGACGTG CGCCTGAACA AGCTGCGCCA GAGCAGCGGT GCCGTCACCG CCAAGGCGCA GCTCGACGCC CTGAAGGCGG CGCGGGCGGC GGCGCAGTCC GCACCGGTCA AGAACCTCTG A
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Protein sequence | MANNAIFARL ANLWSGFISL WVSDVEKAHP EIAYQNAIAS MIEKYTQLKA ATGAIIARRQ EITARLEAQE RELASVSADL ETALATNQDD LAVVLIQKKN AVDAALVELR ADAAQATSDA DTAKDSLMQV KSEIDKLKAE KDRMLAQMHS AQARLKIQGQ LDGLSVDAEV QALGAVRDHI KSQVAQASLG AELRESDLDV RLNKLRQSSG AVTAKAQLDA LKAARAAAQS APVKNL
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