| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2213 |
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| Symbol | |
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| ID | 6160978 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2414221 |
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| End bp | 2415510 |
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| Gene Length | 1290 bp |
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| Protein Length | 429 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641664982 |
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| Product | L-rhamnose catabolism isomerase |
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| Protein accession | YP_001791244 |
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| Protein GI | 171058895 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4952] Predicted sugar isomerase |
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| TIGRFAM ID | [TIGR02629] L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.118721 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCCTGA TCGACAAGAA CCTCATCGCC GCGCACAACG ACCGGCTCCT GCGCCACGTC
AACAACGACT ACGCCCACCT GGGCGAACAG CTCGCCCGCC GCGGCATCGA CATCGAAGCC
GTGCGCGCCA AGGTGGCGGC ATTCGGCGTC GCCATCCCGA GCTGGGGCGT GGGCACCGGC
GGCACGCGTT TCGCGCGTTT CCCGGGCCGC GGCGAGCCGC GCAACGTGTT CGACAAGCTC
GAAGACTGCG GCGTGATCCA GCAGCTGTCG CGCGCCACGC CGACCGTCTC GCTGCACATT
CCGTGGGACA CGTGCAGCGA CTGGAGCGAG CTGCGCCAGG CCGCAGCCAG CCACGGCCTG
GCGTTCGACG CGATCAACTC CAACACCTTC TCCGACCAGA AGGGCCAGGC CCACAGCTAC
AAGTTCGGCA GCCTGACGCA CGGCGACGCG GCCACCCGCG CGCAGGCCGT GGCGCACAAC
ATCGAGTGCA TCGAGATCGG CCAGAAGCTC GGCAGCAAGG CGCTGACGGT GTGGATCGGC
GACGGTGCCA ACTTCCCCGG CCAGCAGCAT TTCCGCCGCG CCTTCGACCG CTACCTGGAG
AGCGCGCAGC AGATCTACGC CGCGCTGCCG GGCGACTGGC GAATGATGCT GGAGCACAAG
ATCTGCGAGC CGGCGTTCTA CGCCACCGTG ATCCAGGACT GGGGTTCGAG CTTCATGGCT
GCCAGCGCGC TGGGCCCGAA GGCGCAGTGC CTGGTCGACC TCGGCCACCA CGCGCCCAAC
GTCAACATCG AGATGATCGT GGCGCGCCTG ATCGCCGCCG GCAAGCTGGC GGGTTTCCAC
TTCAACGACA GCAAGTACGG CGACGATGAT CTCGATGCCG GCAGCGTCGC GCCGTATCGC
CTGTTCCTGG TCTTCAACGA ACTGGTGGCT GCGGCGCACG AGGGTGTGAG CGGCTTCGAC
CCGGCCTACA TGCTCGACCA GAGCCACAAC GTCACCGATC CGATCGAGAG CCTGATGACC
AGCGCCGCGC AGGTGCAGCG CACCTACGCG CAGGCGCTGA TCGTCGACCG CGCCGCGCTC
GACGCCGCGC AGGACGCCAA CGACGCGCTG GTGGCCACGC AGTGCCTCAA GCGCGGCTTC
GACACCGACG TCACGCCGAT CCTGCAGCGT GTGCGCTTCG ATGCCGGCGG CGCGATCGAC
CTGGTCGGCG CCTACCGCGC CAGCGGCTAC CGCCAGCGCG TGGCCGAGGC CCGGCCGGCG
GTGGCGGGCG GTGGTGGCGG CATCGTCTGA
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| Protein sequence | MSLIDKNLIA AHNDRLLRHV NNDYAHLGEQ LARRGIDIEA VRAKVAAFGV AIPSWGVGTG
GTRFARFPGR GEPRNVFDKL EDCGVIQQLS RATPTVSLHI PWDTCSDWSE LRQAAASHGL
AFDAINSNTF SDQKGQAHSY KFGSLTHGDA ATRAQAVAHN IECIEIGQKL GSKALTVWIG
DGANFPGQQH FRRAFDRYLE SAQQIYAALP GDWRMMLEHK ICEPAFYATV IQDWGSSFMA
ASALGPKAQC LVDLGHHAPN VNIEMIVARL IAAGKLAGFH FNDSKYGDDD LDAGSVAPYR
LFLVFNELVA AAHEGVSGFD PAYMLDQSHN VTDPIESLMT SAAQVQRTYA QALIVDRAAL
DAAQDANDAL VATQCLKRGF DTDVTPILQR VRFDAGGAID LVGAYRASGY RQRVAEARPA
VAGGGGGIV
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