Gene Lcho_2148 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2148 
Symbol 
ID6163720 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp2348815 
End bp2350065 
Gene Length1251 bp 
Protein Length416 aa 
Translation table11 
GC content69% 
IMG OID641664916 
Producthypothetical protein 
Protein accessionYP_001791179 
Protein GI171058830 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.0000425071 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCAAAACA TCGAACTCAT CTCCGCTGTC GTCTTCGGGC TCGCGCTGCT GCACACGTTT 
TCGGTCAAGT TCTTCGAGCA GCTCGCGCAC CGGCATCCCC GGCACGCCGG GCTGTTTCAC
CTGCTCGGCG AGATCGAGGT CGTGTTCGGC TTCTGGGCCT TCGTGCTGAT CGCGCTGATG
GCCTTGGTGG ACGGCGGGCC GCGGGCGATC GCCTACGTCG AGTCGCGGCA ATACACCGAG
CCGCTGTTCG TGTTCGTGAT CATGGTGGTG GCGGCCTCGC GGCCGGTGCT GCAGGCGATC
CAGGCGCTGA TTGCCGGCAT CGCGCGCCGG GCACCCGGGC AGACCGCGGT CATGACGGTG
TGGCTGTGCC TCGCGCTGGT GCCGCTGATC GGCTCGTTCA TCACCGAGCC GGCGGCCATG
ACGCTGGCCG CGCTGATGCT GGCGCCGCGG GTCTTTCGCC CCGGCATGCC CGAGTGGCTG
AAATACGGCG CGCTGGGCGT GCTGTTCGTC AACGTCTCGA TCGGTGGCAC GCTGACCTCG
TTCGCGGCGC CGCCGGTGCT GATGGTGGCC GGCACCTGGG GCTGGGACAG CGCCTTCATG
GCACGGCACT TCGGCTGGAA GGCCGCCATC GCCGTGCTGA TCAACGCCAC GGCGATCACC
TGGCTGCTGC GGCGTCACCT CGCCACGGCT GACGGCGACA GCGCGCCGCC GCAGGTCCAC
CCCGCGTCGA AGACGGTCAG CGCGATCCAC CTGGCGTTTC TGGCCGCGGT GGTCGTGTTC
GCGCATCACC CGGTGATCTT CCTGGGGCTG TTCCTGCTGT TCCTGGGCTT CACGCAGGCC
TACGCGCGCT ACCAGAGCCC GCTGATCCTG AAAGAGGCGC TGCTGGTCGG CTTCTTCCTG
GCCGGGCTGG TGGTGCTGGG TGGCATGCAG CAGTGGTGGC TGCAGCCGAT CGTCTCCAGC
CTCGAACCGA CCGCGCTGTT CTTCGGCGCG CTCGGGCTGA CGGCGATCAC CGACAACGCG
GCGCTGACCT ACCTCGGCTC GCTGATCGAG GGCATGTCCG ACCCGGCCAA GTACATGCTG
GTGGCCGGCG CGGTGGCCGG CGGCGGCCTG ACCGTGATCG CCAACGCGCC CAACCCGGCC
GGCGTGACGC TGCTCAAGCA GGGCTTCGAG GACCAGTCCA TCGGCGCCGG CGGTCTGTTG
GCCGGCGCGC TGTTGCCCAC GATGGTCGCA GCCGCGTTGC TGCTGTCCTG A
 
Protein sequence
MQNIELISAV VFGLALLHTF SVKFFEQLAH RHPRHAGLFH LLGEIEVVFG FWAFVLIALM 
ALVDGGPRAI AYVESRQYTE PLFVFVIMVV AASRPVLQAI QALIAGIARR APGQTAVMTV
WLCLALVPLI GSFITEPAAM TLAALMLAPR VFRPGMPEWL KYGALGVLFV NVSIGGTLTS
FAAPPVLMVA GTWGWDSAFM ARHFGWKAAI AVLINATAIT WLLRRHLATA DGDSAPPQVH
PASKTVSAIH LAFLAAVVVF AHHPVIFLGL FLLFLGFTQA YARYQSPLIL KEALLVGFFL
AGLVVLGGMQ QWWLQPIVSS LEPTALFFGA LGLTAITDNA ALTYLGSLIE GMSDPAKYML
VAGAVAGGGL TVIANAPNPA GVTLLKQGFE DQSIGAGGLL AGALLPTMVA AALLLS