| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1758 |
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| Symbol | |
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| ID | 6160323 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1886126 |
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| End bp | 1888465 |
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| Gene Length | 2340 bp |
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| Protein Length | 779 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641664520 |
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| Product | type I secretion system ATPase |
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| Protein accession | YP_001790790 |
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| Protein GI | 171058441 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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| TIGRFAM ID | [TIGR03375] type I secretion system ATPase, LssB family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.0262668 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTTCGT CCCGCGCGTC CGATCCCGCC GCCGCTCCGG GCCCGGCCAT TGCCGCCCCG
GATGCCGCGC CGGAAGGTGC CGTGCCGAGC GACGACGCGC TGCTGTCGGC GGTGCTCTGG
CTGTGCCGCC ACCACGGCAT CGACCGCACG CCGCACTCGC TGCTGTCGGG TCTGGGCATC
TCGCAGCTGC TGACCCCGCC GCTGGCGGTG CGGGTGCTGC AGGAGGCCGG CTTCAACGCC
AGCGTGGTCG ACCGCGAGCC GCGCCAGATC CTGGCCCTGC TGCTGCCGGC GATCCTGCTG
CTCAAGAACG GCGACGCCTG CGTGCTGCTC GAGCGCGTGG TGCGCGGCAA GGACCTGCGC
TACCGCATCC TGATGCCGCC GGCCGACGCC GGCGATGCGC CGGTCGAGGT GCTGGCCAGC
GAGGACGAGC TGCTGCAGGA GTATTCCGGC TACGTGCTGA TGGCCACGCC GCGCCTGGGC
GCCACCGCGA CTGCCAACCG CGCCGCCATC GACGACATGC TGGTGCCCGG CCGCCACTGG
CTGTGGGGCA CGCTGCGGCG CTTCATGCCC TATTACCGCG GCGCCATGCT GGCGGCGCTG
CTGAGCAACG TGCTGATGCT GTTCATCGGC CTGTTCACCT CGGTGGTCTA TGACCGGGTG
ATCCCGCACA AGGCCTTCGT CACGCTGTGG TCGCTGGCCG CCGGCGCCGG GCTGGCGATC
GTCTTCGACC TGATCGCGCG CCAGCTGCGC AGCCACCTGA TCGACCTGGC CGGCAAGAAG
GCCGACCTCG CGCTGGGTGC GATCCTGTTC CGCAAGGCGC TGTCGATCCG GCTCGAGAAC
CGGCCGGAAT CGTCGGGCTC GTTTGCGCAC CAGCTCGCGC AGCTCGAGGT GGTGCGCGAT
TTCTCGACCT CGGCGACGAT GTCGGCGATC AGCGACCTGC CGTTCATCGT GCTGTTCATG
GCCATGATCT GGTTCGTCGC CGGTGAACTG GTGGTGGTGA TGCTGGTGGC GGTGCCGCTG
GTGCTGTTGC TGGCGGTGGC GGTGCAGCAG GTGCTGCGCC GCTCGATGAC CGCCAACCAG
CGCCAGATGG CCGACATGCA GGGCCTGCTG ATCGAGACCA TGGAAGGCAT GGAGGCGGTG
CGCGCAGCCA GCGCGCAGGG CCATTTCCAG CGCCAGTACG AGGAGAGCAA CGCGATGGCG
GCGCAGACCT CGCTGCGCTC GCGCGCGCTG ATGAGCTGGG TCAACAACGC CACGATGGTG
TCGCAGCAGC TGATCACGGT GGTGATGCTG GTGTGGGGCG TGCACCTGAT CGCCGACAAC
CAGCTGACGG CCGGTGCGCT GATCTCGGCG GTGATGTTCG CCGGCCGGGT GGTGGCACCG
CTGGGTGGCG TGGTCAGCCT GGCGTCGCGC TACCAGGGCG CGCGCGCCGC GCTGCGCGTG
CTCGACAACC TGATGGCCCA GCCGAGCGAA CGCGAGGAAG GCCGGCGCTA CCTGCCGCGC
AGCGCGATCC GCGGCCAGCT GGGCCTGCGC GACGTCAGCT TCCAGTACCA GGCCCCGCAG
GCGATGGGTC AGGCGCCCGG TCCGACCGTG CTCAAGGGCA TCAACCTGCG CATCGAGGCC
GGCGAGCGGG TGGCCATCCT GGGCAAGATC GGCAGCGGCA AGTCGACCGT GCTGCGCCTG
CTGGCCGGGC TCTACATGCC CACCGAGGGC TACACCGAGG TCGACGGCAT CGACCTGCGT
CAGATCGACC CGGCCGACTA CCGCGCCCAG GTCGGTTTCG TGGCGCAGGA GCCGCGGCTG
TTCCGCGGCA GCTTGCGCGA CAACATCCTG CTCAGCCGCC CGCATGCCGG CGCCGACACG
CTGGCCGAGG TGCTGCGCCT GACCGGGCTC GACCGTGTCG CCGCCGCGCA CCCGTCGGGC
ATCGACCTGC CGGTGGGCGA GGGCGGCAAC ATGCTGTCGG GCGGCCAGCG TCAGCTCGTC
GCGCTGGCGC GCTGCCTGGT GACGCAGCCG CAGGTGCTGC TGATGGACGA GCCGACCAGC
TCGATGGACG CGCAGAGCGA GGCCCAGTTC ATCGCCCAGC TCAAGCAGAC GATGGGCAGC
CGCACGATGG TGGCGGTGAC GCACCGCCCG GCGTTGCTCG AGGTGGTGGA CCGCATCGTC
GTGATCGACG CCGGCAAGGT GGTGATCGAC GGCCCCAAGC AGCAGGTGCT GGCGGCGCTG
GCCGGCGGTG GCGCGCCGCG GCAGGCGGTC GGCCAGGCGG CCGGTCGTGC CGTGGGCATG
GAGGCGGCGC CGGCTCAGCC ACCGAGCGCG CAGCGACCGC CGTTCAGCGT GGTGACCTGA
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| Protein sequence | MSSSRASDPA AAPGPAIAAP DAAPEGAVPS DDALLSAVLW LCRHHGIDRT PHSLLSGLGI
SQLLTPPLAV RVLQEAGFNA SVVDREPRQI LALLLPAILL LKNGDACVLL ERVVRGKDLR
YRILMPPADA GDAPVEVLAS EDELLQEYSG YVLMATPRLG ATATANRAAI DDMLVPGRHW
LWGTLRRFMP YYRGAMLAAL LSNVLMLFIG LFTSVVYDRV IPHKAFVTLW SLAAGAGLAI
VFDLIARQLR SHLIDLAGKK ADLALGAILF RKALSIRLEN RPESSGSFAH QLAQLEVVRD
FSTSATMSAI SDLPFIVLFM AMIWFVAGEL VVVMLVAVPL VLLLAVAVQQ VLRRSMTANQ
RQMADMQGLL IETMEGMEAV RAASAQGHFQ RQYEESNAMA AQTSLRSRAL MSWVNNATMV
SQQLITVVML VWGVHLIADN QLTAGALISA VMFAGRVVAP LGGVVSLASR YQGARAALRV
LDNLMAQPSE REEGRRYLPR SAIRGQLGLR DVSFQYQAPQ AMGQAPGPTV LKGINLRIEA
GERVAILGKI GSGKSTVLRL LAGLYMPTEG YTEVDGIDLR QIDPADYRAQ VGFVAQEPRL
FRGSLRDNIL LSRPHAGADT LAEVLRLTGL DRVAAAHPSG IDLPVGEGGN MLSGGQRQLV
ALARCLVTQP QVLLMDEPTS SMDAQSEAQF IAQLKQTMGS RTMVAVTHRP ALLEVVDRIV
VIDAGKVVID GPKQQVLAAL AGGGAPRQAV GQAAGRAVGM EAAPAQPPSA QRPPFSVVT
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