| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1719 |
|---|
| Symbol | |
|---|
| ID | 6162813 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 1836152 |
|---|
| End bp | 1836502 |
|---|
| Gene Length | 351 bp |
|---|
| Protein Length | 116 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641664479 |
|---|
| Product | small multidrug resistance protein |
|---|
| Protein accession | YP_001790751 |
|---|
| Protein GI | 171058402 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2076] Membrane transporters of cations and cationic drugs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0000000241026 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCCGC TCCTCAATGT TCCCCAAGCC TGGTCGGTGC TGGCGGTGGC CATCGTCTTC
GAGGTCGCCG GCACCACCTG CCTGCGCCTG AGCGAGGGCC TGAGCCGGCT GTGGCCGTCG
CTGCTGATCT TCGCGTTCTA CGGCGTGTCG TTTTCGCTCA ACGCGATGGT GGTGCGCACG
CTCGGCGTCG GCGTGGTCTA TGCCGTCTGG TCGGGCGTGG GCACGGTGCT GACCGCCCTG
ATCGGCTACC TCTGGTTCAA GGAGCCGGCC ACCGCGCTCA AGCTCGTCAG CGCCGGGCTG
ATCGTGATGG GCGTGTTCGG CCTGCATGCC TCCTCGCGCA GCGTCGCCTG A
|
|---|
| Protein sequence | MLPLLNVPQA WSVLAVAIVF EVAGTTCLRL SEGLSRLWPS LLIFAFYGVS FSLNAMVVRT
LGVGVVYAVW SGVGTVLTAL IGYLWFKEPA TALKLVSAGL IVMGVFGLHA SSRSVA
|
|---|
| |