| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0248 |
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| Symbol | |
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| ID | 6160536 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 264964 |
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| End bp | 266124 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641662992 |
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| Product | pyrroloquinoline quinone biosynthesis protein PqqE |
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| Protein accession | YP_001789288 |
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| Protein GI | 171056939 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0535] Predicted Fe-S oxidoreductases |
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| TIGRFAM ID | [TIGR02109] coenzyme PQQ biosynthesis protein E |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.00239329 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACGAACA TGGCCGCGTC CGCTGTTGCC GTTCAGCCGC CCGGCCCGCC GTTGTGGCTG
CTGGCCGAGG TGACCTACCG CTGCCCGCTG CACTGCGTCT TTTGCTACAA CCCGCTCGAC
TTCGCCGCCC AGGGCAAGGC GCAGGAGCTG CCCACCGCCG ACTGGCTGCG CGTGCTGCGC
GAGGCGCGTG CGCTGGGCGC CGTGCAGTGC GGCTTCTCGG GCGGCGAGCC GCTCGAGCGC
GACGACCTCG AGGAGATGAT CGCCGAGGCG CACCGGCTCG GTTTCTACAC CAACCTGCTG
ACCTCGGGTG TCGGCCTGAC CGCGCAGCGC GCCGCCGCGC TGAAGGCCGC CGGCCTCGAC
CACATCCAGC TCAGCTTCCA GGACTCGACC CGCGAGCTCA ACGACTTCCT GAGCCACACC
AAGACCTTCG GCCTGAAGCA GCAGGTCGGC GAGCTGATCA AGGCCAACGG CTGGCCGATG
GTGATGAACG TGGTGATCCA CCGCCTCAAC ATCGATCACA TCGACCGCAT CATCGCGATG
GCCGATGCGC TCGGTGCCGA GTACCTCGAA CTCGCCAACT CGCAGTACTA CTCGTGGGCG
CACCTGAACC GCGACCACCT GCTGCCCACG CACGATCAGT TGAAGCGCGC CGAGGCGATC
ACCGACGAGT GGCGGGTCAA GCTGGCCGAC CGCATGAAGC TGTTTTTCGT CGCTCCCGAC
TACCACGAGG GCACGCCCAA GAAGTGCATG AACGGCTGGG GCAACGTCTT CCTGACCATC
ACGCCCGACG GCACGGCCTT GCCTTGCCAC ACCGCCAAGA TGCTGCCCGG CCTGGCGTTC
CCGAACGTGC AGACGAGCTC GGTGCGCGAG ATCTGGCAGG ACAGCGAAGG CTTCAACCGC
TTTCGCGGCA CCGGCTGGAT GAAGGAGCCG TGCGTGTCGT GCCCCGACAA GGAAAAGGAC
CTCGGCGGCT GCCGCTGCCA GGCTTTCCTG CTGGCCAACG ACCCGGCCGC GGCCGACCCG
GTCTGCCCCA AAAGCCCGCA TCACGGCGTG GTCAAGGCGG CGGTCGAGGC CAGCGAAGCG
GGTGCGGTGC CGGTGCGACC GCTGGTTTTC CGCGATCCGA AAAATTCGAA GGCTTTCGTC
AGCCCGGTCG GGCAGAGCTG A
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| Protein sequence | MTNMAASAVA VQPPGPPLWL LAEVTYRCPL HCVFCYNPLD FAAQGKAQEL PTADWLRVLR
EARALGAVQC GFSGGEPLER DDLEEMIAEA HRLGFYTNLL TSGVGLTAQR AAALKAAGLD
HIQLSFQDST RELNDFLSHT KTFGLKQQVG ELIKANGWPM VMNVVIHRLN IDHIDRIIAM
ADALGAEYLE LANSQYYSWA HLNRDHLLPT HDQLKRAEAI TDEWRVKLAD RMKLFFVAPD
YHEGTPKKCM NGWGNVFLTI TPDGTALPCH TAKMLPGLAF PNVQTSSVRE IWQDSEGFNR
FRGTGWMKEP CVSCPDKEKD LGGCRCQAFL LANDPAAADP VCPKSPHHGV VKAAVEASEA
GAVPVRPLVF RDPKNSKAFV SPVGQS
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