| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0229 |
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| Symbol | |
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| ID | 6162753 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 243539 |
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| End bp | 246169 |
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| Gene Length | 2631 bp |
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| Protein Length | 876 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641662973 |
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| Product | DNA topoisomerase III |
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| Protein accession | YP_001789269 |
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| Protein GI | 171056920 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.00108901 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAGCAAGT CACTGGTCAT CGCCGAAAAG CCGTCCGTCG CGCAGGACAT CGTGCGTGCG
TTGACGACGA CGTCGGGCAA GTTCGAGAAA CACGCCGAAC ATTTCGAGAA CGACCACTAC
GTCGTCTCGT CGGCGGTCGG CCACCTGGTC GAGATCCGCG CGCCCGAGGA ATACGACGTC
AAGCGCGGCA AATGGAGCTT CAACAACCTG CCGGTGGTGC CGCCGCACTT CGATCTGGAG
CCGATCGACA AGAGCAAGGG GCGGCTCAGT GCGCTGGTCA AGCTGATCAA GCGCAAGGAC
GTCACCCATC TCATCAACGC CTGCGACGCC GGGCGCGAGG GCGAGCTGAT CTTCCGCCTG
ATCGAGCAGT ACGCGCTGGG CGCCAAGGTC GGCACCAAGC CGGTGCAGCG CCTGTGGCTG
CAGAGCATGA CGCCGCAGGC GATCCGCGAC GGCTTCGAGA AGCTGCGCTC GGACGCCGAG
ATGCGCGGCC TGGCCGAAGC CGCGCGCAGC CGCAGCGAGG CCGACTGGCT GGTCGGCATC
AACGGCACGC GGGCGATGAC GGCCTTCAAC TCGCGCGACG GCGGCTTCTT TCTCACCACC
GTCGGGCGGG TGCAGACGCC CACGCTGTCG ATCGTGGTCG AGCGCGAGGA GAAGATCCGC
AAGCACGTCT CGCGGCCGTA CTGGGAGGTG CGGGCCGACT TCGGCGCCGC CGCCGGCTTG
TACGAGGGCA AGTGGTTCGA CCCCAAGTTC AAGAAGGACG ACGACCTCGA GCGCCGCGCC
GACCGGCTCT GGAGCGAGGC CGAGGCCGAC GCCATCGCCG CCGCGGTGCG CGGCCGGACC
GGCACGGTGC GCGAGGAGGC CAAGCCCAGC ACCCAGGCCA GCCCGCTGCT CTACGACCTG
ACGACGCTGC AGCGCGAGGC CAACGGCCGC TTCGGCTTCT CGGCCAAGAC GACGCTGTCG
ATCGCCCAGG CGCTGTACGA AAAACACAAG GTGCTGACCT ATCCGCGGAC CGACGCCCGT
GCGCTGCCCG AGGACTACGT GCCGGTGGCC AAGGAGACGC TGGCGATGAT CGCCAGCGAG
GACCTGCCCG GCCCCCTGCG CGAGCTGGCC CAGCATGCCC GCAAGGCGCT CGATGCCGGC
TACGTCAAGC CGGTCAAGCG GGTGTTCGAC AACAGCAAGA TCTCGGACCA CTTCGCCATC
ATCCCGACCC TGCAGGCGCC GCGCAGCCTG AGCGAGATCG AGGCCAAGCT CTACGACATG
GTGGTCAAGC GCTTCATCGC GGTGTTCTAC CCGTCGGCCG AATTCATGGT CACGACCCGC
ATCACCGAGG TGCCGGTGGC TCAGTCGGCG AGCCAGTCGC TGCCCAAGGG GGTGACCTCG
CCGCTGCAGT TCCAGACCAA CGGCAAGGTG CTGGTCAACC CGGGCTGGCT GGCGGTCTAC
GGCAAGGACG CGCAGGACGA GGACGCCAAC CTGGTGCCGG TCAAGCCCGG CGAGACGGTG
CAGGCTGAGG AGCTGCGCAT CTCGCCGCTC AAGACCCGGC CGCCCGCGCG CTACAACGAG
GCCACGCTGC TGAGCGCGAT GGAAGGCGCC GGCAAGCTGA TCGACGACGA GGAGCTCAAG
GCCGCGATGC AGGAGAAGGG CCTGGGCACG CCGGCCACCC GCGCGCAGGT GATCGAAGGC
CTGATCCTCG AGAAATACAT GCTGCGCGAG GGCCGCGACC TGATCGCCAC CGCCAAGGCC
TTCCAGCTCA TGACGCTGCT GCGCGGCCTG GCGATCGAGG ACCTGACCAA GCCCGAGCTG
ACCGGCCAGT GGGAATACCA GCTCAGCCAG ATGGAGAAGG GCCAGCTCAG CCGCGATGCC
TTCATGCACG GCATCGCCGA CATGGCGCAG CGCATCGTCA AGAAGGCCAA GGAATACGAC
CGCGACACCA TCCCCGGCGA CTACGCGACG CTGAAGGCGC CCTGCCCGAA CTGCGGCGGC
GTGGTCAAGG AGAACTACCG CCGCTTCGCC TGCGTCGGCC GTGACGCCAA CGGCAGCAGC
GGCGCCGAGG GCAGCGGCTG CGGCTTCTCG ATCAGCAAGA TCCCGGGCTC GCGCAGCTTC
GAGCTGCACG AGGCCGAGGC CTTCCTGCGC GACCACAAGA TCGGCCCGCT GGAGGGCTTC
CGCTCCAAGG CCGGCTGGCC GTTCACGGCC GAGCTCAAGC TGGTGCGCGA CGACGAGATC
AACAACTGGA AGCTCGAGTT CGACTTCGGC GAGGACGCCA AGAAGGACGA CGAGTCCGGC
GAGCCGGTCG ACTTCAGCGC CCAGACCAGC CTCGGCAGCT GCCCGAAGTG CAAGGGCCAC
GTCTACGAAC ACGGCACCAG CTACGTCTGC GAGCACGCGG TGGGCGCGCC CCAGACCTGC
GACTTCAAGA CCGGCAAGAT CATCCTGCAG CAGCCCGTCA CGCACGAGCA GATGAACAAG
CTGCTGATCG AAGGCAAGAC CGCGCTGCTC GACGGCTTCG TCTCCAACAA GACCAAGCGC
AAGTTCAAGG CCTTCCTGGT GTTCGACAAG AAGGAGGGCA AGGTGGTGTT CGAGTTCGAG
CCGCGTGCGG CGCGGGTGCC GGCCAAGAAG GCGGCCGCGA AGGCCTCATG A
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| Protein sequence | MSKSLVIAEK PSVAQDIVRA LTTTSGKFEK HAEHFENDHY VVSSAVGHLV EIRAPEEYDV
KRGKWSFNNL PVVPPHFDLE PIDKSKGRLS ALVKLIKRKD VTHLINACDA GREGELIFRL
IEQYALGAKV GTKPVQRLWL QSMTPQAIRD GFEKLRSDAE MRGLAEAARS RSEADWLVGI
NGTRAMTAFN SRDGGFFLTT VGRVQTPTLS IVVEREEKIR KHVSRPYWEV RADFGAAAGL
YEGKWFDPKF KKDDDLERRA DRLWSEAEAD AIAAAVRGRT GTVREEAKPS TQASPLLYDL
TTLQREANGR FGFSAKTTLS IAQALYEKHK VLTYPRTDAR ALPEDYVPVA KETLAMIASE
DLPGPLRELA QHARKALDAG YVKPVKRVFD NSKISDHFAI IPTLQAPRSL SEIEAKLYDM
VVKRFIAVFY PSAEFMVTTR ITEVPVAQSA SQSLPKGVTS PLQFQTNGKV LVNPGWLAVY
GKDAQDEDAN LVPVKPGETV QAEELRISPL KTRPPARYNE ATLLSAMEGA GKLIDDEELK
AAMQEKGLGT PATRAQVIEG LILEKYMLRE GRDLIATAKA FQLMTLLRGL AIEDLTKPEL
TGQWEYQLSQ MEKGQLSRDA FMHGIADMAQ RIVKKAKEYD RDTIPGDYAT LKAPCPNCGG
VVKENYRRFA CVGRDANGSS GAEGSGCGFS ISKIPGSRSF ELHEAEAFLR DHKIGPLEGF
RSKAGWPFTA ELKLVRDDEI NNWKLEFDFG EDAKKDDESG EPVDFSAQTS LGSCPKCKGH
VYEHGTSYVC EHAVGAPQTC DFKTGKIILQ QPVTHEQMNK LLIEGKTALL DGFVSNKTKR
KFKAFLVFDK KEGKVVFEFE PRAARVPAKK AAAKAS
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