Gene LGAS_1678 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLGAS_1678 
Symbol 
ID4439789 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLactobacillus gasseri ATCC 33323 
KingdomBacteria 
Replicon accessionNC_008530 
Strand+ 
Start bp1658728 
End bp1659411 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content32% 
IMG OID639673498 
Producttranscriptional regulator 
Protein accessionYP_815406 
Protein GI116630234 
COG category[K] Transcription 
COG ID[COG1737] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.00566045 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value0.0111544 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATATTC AAACTATTAG CGAAAAGTTT CAACTAAATA CTGATGAACA AAAAATATTA 
ATTTATATGA ATCAACACCG TAATGAAATT AAAAATATCA ATATTCGTGA ACTCGCCAAA 
CGAACATTTA CCTCTCCTAG CTTTATCGTT AAGACCTGTA AAAAGATGAA GCTTTCAGGA 
TATTCAGAAT TGGTCTTTCT AATCGCAGAT GCACCAAATT TTCCTAATAA TACTGAAAAC 
GACTTAAAAG TAGAGTCATA CGTAAAGCCT TTTTCCAACT TGATGGATAA GCATAAAGAC 
TCAATGATCA TGATATTGGG TAGTGGATAC TCTCAAAATA TTGCTAATTA TATGAGTGAA 
TATCTTAATT TGAATGGCTT TCGCTGTACA TCCAATTCGC ATCTTGAGAT GCTTAGAAAG 
CATAAGAACA CTTTAATAAT TATCATCAGC AATTCTGGAG AAACAAAGCG ACTGGCTGAA 
CTTTGCATAC AAGCTCAGAA AAATAATCGT GATGTTATTT CCTTTACAGG AGATAAGAAT 
TCAACAATTG CAAAACACTC AACGCTTGCA ATAAGTTCAG ATACTTTTAA TCCCACATCT 
TTTGACAGCC ATTACCCTCA GCTGTTTTTT GGTCTAACAC TCATCTATTT TGAATTATTA 
ATGAGTAACT TTTTGTCTAA TTAG
 
Protein sequence
MNIQTISEKF QLNTDEQKIL IYMNQHRNEI KNINIRELAK RTFTSPSFIV KTCKKMKLSG 
YSELVFLIAD APNFPNNTEN DLKVESYVKP FSNLMDKHKD SMIMILGSGY SQNIANYMSE 
YLNLNGFRCT SNSHLEMLRK HKNTLIIIIS NSGETKRLAE LCIQAQKNNR DVISFTGDKN 
STIAKHSTLA ISSDTFNPTS FDSHYPQLFF GLTLIYFELL MSNFLSN