| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1949 |
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| Symbol | |
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| ID | 3934400 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 1941091 |
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| End bp | 1942752 |
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| Gene Length | 1662 bp |
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| Protein Length | 553 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637904303 |
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| Product | alpha amylase protein |
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| Protein accession | YP_509891 |
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| Protein GI | 89054440 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.342567 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAAGA TGCAGAACAT GACACCGGAT CAGATCCTGG CCCACGACGC CGATTGGTGG
CGCGGCGCGG TGATCTATCA GATCTATCCG CGCAGCTATC AGGACAGCAA CGGCGACGGG
ATCGGCGACC TGAACGGGAT CACCCAGCGC CTGTCGCATA TCCAGTCGCT TGGCGTGGAT
GCGATCTGGA TCTCACCGTT CTTCACCTCT CCGATGAAGG ATTTCGGCTA CGACGTCAGT
GATTATTGCG ATGTCGACCC GATGTTCGGA TCGCTCAGCG ATTTCGACGT GCTGATCGAG
ACGGCCCATG CCCTTGGGCT GAAGGTGATG ATCGATCTGG TGCTGTCCCA CACCTCGGAC
GTGCATCCGT GGTTCATCGA AAGCCGGGCG GACCGCGACA ATGAGCGGGC CGATTGGTTT
GTCTGGGCCG AGCCGAAGGA AGACGGCACG CCGCCCAACA ATTGGTTGTC GATTTTCGGC
GGCTCTGCCT GGCAATGGGA CGCGCGGCGC GAGCAATATT ACCTGCACAA TTTCCTGACC
TCCCAGCCGG ACCTGAACTT CCATTGTCCG GCGGTGCAGG ATGCGCTTCT GGATGTGGTG
CGCTTCTGGC TGGATCGCGG GGTGGATGGC TTCCGCCTCG ATACGATCAA CTTCTACTTC
CACGATGATG AGATGCGCTC GAACCCGGCG CTGCCCAAGG ACAAGCGCGA CGACACCATC
GCGCCCTCGG TGAACCCGTA TAACCACCAG CTGCACGTCT ATTCCAAGAA CCAGCCGGAG
AACCTGGACT TCCTCAAACG CTTCCGCGCC GTGCTGGATG AATATCCCGC CGCCACGGCT
GTGGGGGAGG TCGGTGACGC CCAGTTCGGG CTGGAGATCA TGGGCCAGTA CACGGCGGGC
GATGACATGG TCCACATGTG CTACAGCTTC GAGTTTCTGG CCAAGGATCG CCCCACCGCG
GCGCGGTTTG CCGATGTCAT GACCCGGATT GACGAGGCCG CCCCCGATGG ATGGGCCTGC
CTCGCGTTTT CCAACCACGA CGTGATGCGC CACGCGACCC GGTGGGAGTT GCCGCCGGCG
GCGATGCGGG CGCTGACGAC ATTGATGATG TGTTTGCGCG GCTCCCTCTG CCTCTATCAG
GGCGAGGAAT TGGGCCTGCA CGAGGCCGAC GTGCCGTTCG AGGCGCTGCA AGATCCCTAT
GGCATCGAGT TCTGGCCTGA ATTCAAGGGC CGCGACGGGT GCCGCACGCC GATGGTGTGG
GAACCCTCAA ACCAGAACGG TGGCTTTTCC AGCGCGCAGC CCTGGCTACC GGTCAGCCAC
GAACATCTGA CCCAATCGGT GGCCGCGCAG GAAGCGGATC CCGGATCGCT GCTGCACCAT
TACCGCCGGG CCATCGGCTT CCGCCATGCG CATAATGCCC TGCTGAAGGG GGCCCATGCG
GATGTGCAGG CCACCGGCGA TGTGTTGCAC TTCACCCGGA CCGACGGCGA CGAGACGTTG
TTTATCGCAA TCAACCTCTC CGGTGAGCCT GCGGCCATCG ACGCGCCAGC AGGCAATTGG
GTGCAAATCG GACAAGAACT CGGATCGACC GGCCCTGCGC CGGACGGAAA ATATCACCTC
GGCCCATGGC AGCCTGCGCT TGCGCTGCGC GTGGCGGGCT AA
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| Protein sequence | MTKMQNMTPD QILAHDADWW RGAVIYQIYP RSYQDSNGDG IGDLNGITQR LSHIQSLGVD
AIWISPFFTS PMKDFGYDVS DYCDVDPMFG SLSDFDVLIE TAHALGLKVM IDLVLSHTSD
VHPWFIESRA DRDNERADWF VWAEPKEDGT PPNNWLSIFG GSAWQWDARR EQYYLHNFLT
SQPDLNFHCP AVQDALLDVV RFWLDRGVDG FRLDTINFYF HDDEMRSNPA LPKDKRDDTI
APSVNPYNHQ LHVYSKNQPE NLDFLKRFRA VLDEYPAATA VGEVGDAQFG LEIMGQYTAG
DDMVHMCYSF EFLAKDRPTA ARFADVMTRI DEAAPDGWAC LAFSNHDVMR HATRWELPPA
AMRALTTLMM CLRGSLCLYQ GEELGLHEAD VPFEALQDPY GIEFWPEFKG RDGCRTPMVW
EPSNQNGGFS SAQPWLPVSH EHLTQSVAAQ EADPGSLLHH YRRAIGFRHA HNALLKGAHA
DVQATGDVLH FTRTDGDETL FIAINLSGEP AAIDAPAGNW VQIGQELGST GPAPDGKYHL
GPWQPALALR VAG
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