Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_1424 |
Symbol | |
ID | 3933871 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | - |
Start bp | 1393637 |
End bp | 1394635 |
Gene Length | 999 bp |
Protein Length | 332 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637903774 |
Product | LacI family transcription regulator |
Protein accession | YP_509366 |
Protein GI | 89053915 |
COG category | [K] Transcription |
COG ID | [COG1609] Transcriptional regulators |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00000379312 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.706266 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCCGTAA CACTCAAGGA TGTGGCGGAA CGCGCGGGCG TCTCGACCTC CGCCGTGTCG CGCACCTTCA CCGAAGGGGC GTCCGTCTCG CCCAAGACCC GCGCCAAGGT GGAGCGCGCC GCCGATGCGC TGGGATATTC CCCCAATGCG CTGGCCTCCT CGCTGACCAC GGGGCGCACG AAATTGATTG GGCTGGTCTC CAACAACTTC CACAACCCTC TGTTTTTGGA GGTTTTTGAC AGGTTCACGC GGGGATTGCA GGACCGCGGC CTGCGCCCGC TTCTAGTCAA CCTGTCCGAT GAGACGGACC CGATCAGCTC CGTCCGGATG ATGCGGCAAT ATTCCGTCGA TGGCGCGATT ATCGCCTCCT CCACCCTGCC GCCAAGTTTT GCGGAGGCCT ACCGGATGGC GGGCATCCCC GTCGTCCATT CCTTCGGCCG CTACACCACC GCGCCCCAGG TTCACGTCGT GGGTATCGAC AATGTCGCCT GTGGGCGAAT GGCGGGAGAA GCCCTGATTT CAAGAGGTTA CAGGCGCGTC GCGTTCCTCG GCGGTCCAGA GGGGGCAACG TCGACGCAGG ATCGCGCGCT TGGGTTTCTG GGGGCCTTGC ACGAACACCC CGAGATTGAG GTGACCGTCA GCTATGCGCA GGCCTATTCC TTCGACGCGG GCCGGGTCGA GATGACCAAG CTCCTGATGT CCGACCCAGC GGAGGCCTAC TTTTGCGGTG ATGATGTTCT ATCGGTCGGC GCTTTGTCGG CGGTGCAGGA GGCCGGGCTA TCCGTGCCCG GCGACATCGG CATCATCGGG CTCAACGACA TGCAGATGGC GGGCTGGCAG AATATTAACC TTACCACGAT CCGCCAACCG GTGGCCGAGA TCATCGGCGC GTCGATTGAT TTGGTGATCG GCACCGTGGA GGATCCGAAG CGCCATCCCG AGACGCGGCT ATTCCCCTGC CGCGTGATCG AACGGGGCAC CTTGCGGAAG GTGCCTTAG
|
Protein sequence | MAVTLKDVAE RAGVSTSAVS RTFTEGASVS PKTRAKVERA ADALGYSPNA LASSLTTGRT KLIGLVSNNF HNPLFLEVFD RFTRGLQDRG LRPLLVNLSD ETDPISSVRM MRQYSVDGAI IASSTLPPSF AEAYRMAGIP VVHSFGRYTT APQVHVVGID NVACGRMAGE ALISRGYRRV AFLGGPEGAT STQDRALGFL GALHEHPEIE VTVSYAQAYS FDAGRVEMTK LLMSDPAEAY FCGDDVLSVG ALSAVQEAGL SVPGDIGIIG LNDMQMAGWQ NINLTTIRQP VAEIIGASID LVIGTVEDPK RHPETRLFPC RVIERGTLRK VP
|
| |