Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Huta_2665 |
Symbol | truD |
ID | 8384970 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halorhabdus utahensis DSM 12940 |
Kingdom | Archaea |
Replicon accession | NC_013158 |
Strand | + |
Start bp | 2736794 |
End bp | 2738152 |
Gene Length | 1359 bp |
Protein Length | 452 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644973739 |
Product | tRNA pseudouridine synthase D |
Protein accession | YP_003131559 |
Protein GI | 257053726 |
COG category | [S] Function unknown |
COG ID | [COG0585] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGACAGG CACACCCCGT CGAGCAAGCG GTCGGCATGG AGTACTACGT CAGCGACAGC GACGGCGTCG GCGGGCACCT TCGTCGGGAG CCCGCGGCCT TCGGCGTCCG TGAGGTCGAA GCCTTCCAGG TCGAGCCCAT CGACGCCAAG CAGGGCGCGT ACCCACACGT CGTCTTCCGG GCGACGCTCG CGGGCTGGGA CACAAACGAC TTCGCGAGCG TCCTCTCGGA TCACCTGGGG ATCAGCCGCG AACGCGTCTC CTGGGCCGGG ACGAAGGACA AATACGCCGA GACGACTCAG CTGTTCTCCG TCGCGAAAGT CGACCCCGCC GATCTCGAAA CGATCGACCT CTCGAACGTC GAGATCGAGG TTCTGGGCCG GAGCGGCCGG CCGATCCTCT TTGGCGATCT GGCGGGCAAC GCCTTCGAGA TCGAGATCAG CGAACCCGAC GCGCCCGGAA ATCTCGATGG AGTTCTCGAC GAACTCGCCG CGTTCGCCGG CAGCGCGTCC GGCGGTGGCG AGGACGACGG CTCGATCCGC ATTGGCGTCC CCAACTACTT CGGCCAGCAA CGCTTCGGCA GCCAGCGCCC GGTCACCCAC GAGGTCGGCC TCGCCGTCGC CCGCGGCGGC TGGACGGACG CCGTTCTCGC GTACGTCGGG AATCCACACG ACCGCGAGCG CGAGGATACT CGCAAAGCCC GGAAGTACGT CACGGAAACC GAAGACTGGG AAGGCGCGCT CGATCGACTC CCCAAGCGCC TGGGCTACGA ACGGTCGATG TGCCACCGCC TCGTCGAGAA CGGGGCCGAC GACCCCGAAG ACTTCCAAGA AGCGCTGGAG GCGGTCCCGA CCAACCTCCA GCAACTGTTC GTCAACGCTG CCCAGTCCTA CGCGTTCAAT CGGATTCTCT CGGCACGATT GGAGCGCGGG CTTCCCTTCG ACGAACCGGT GGCCGGCGAC GTGGTTTGCT TCGCTGACAG CGACGCCCCG GAGGAGATCG AACTGCCGGA TACCGGCCGG ACGCAGCGTG TAACCGCGGA CAACGTCGGG ACGGTTCGCC GCCACTGCGA GCGCGGGCGG GCGTTCGTGA CCGCGCCGCT GCTCGGGACC GACAGTGAAC TGGCGGATGG TGAGCCGGGC GAGATCGAAC GGGCGGTCTT TGAGGATCTC GGGATCGGTC CGGCGGACTT CGACCTTCCG GGGGAGTTCC ACTCCGAGGG GACGCGACGG GCGATCCTCC TGCGGACCGA CATCGCCGTC GAACGGGATC CACTGACGCT CTCGTTTGCG CTCCCGAAAG GCTCCTATGC GACGGTCGTC TTGCGGGAGA TCACGAAAGC AGATCCGGCG GACCTTTGA
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Protein sequence | MRQAHPVEQA VGMEYYVSDS DGVGGHLRRE PAAFGVREVE AFQVEPIDAK QGAYPHVVFR ATLAGWDTND FASVLSDHLG ISRERVSWAG TKDKYAETTQ LFSVAKVDPA DLETIDLSNV EIEVLGRSGR PILFGDLAGN AFEIEISEPD APGNLDGVLD ELAAFAGSAS GGGEDDGSIR IGVPNYFGQQ RFGSQRPVTH EVGLAVARGG WTDAVLAYVG NPHDREREDT RKARKYVTET EDWEGALDRL PKRLGYERSM CHRLVENGAD DPEDFQEALE AVPTNLQQLF VNAAQSYAFN RILSARLERG LPFDEPVAGD VVCFADSDAP EEIELPDTGR TQRVTADNVG TVRRHCERGR AFVTAPLLGT DSELADGEPG EIERAVFEDL GIGPADFDLP GEFHSEGTRR AILLRTDIAV ERDPLTLSFA LPKGSYATVV LREITKADPA DL
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