Gene Huta_0393 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHuta_0393 
Symbol 
ID8382658 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorhabdus utahensis DSM 12940 
KingdomArchaea 
Replicon accessionNC_013158 
Strand- 
Start bp386392 
End bp387420 
Gene Length1029 bp 
Protein Length342 aa 
Translation table11 
GC content67% 
IMG OID644971453 
ProductMandelate racemase/muconate lactonizing protein 
Protein accessionYP_003129313 
Protein GI257051480 
COG category[M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only 
COG ID[COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 
TIGRFAM ID[TIGR01927] o-succinylbenzoic acid (OSB) synthetase 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.182534 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAGGTCG ACCCCGTTTC GTTGCCTCTC GCCTCGCCGC TCTCGACGGC TACTGGCACG 
ATCGAACGCC GGGAAGGCTT TCTCGTCAGG CTCGAAGACT CACCGGGGAT TGGCGAGGCG 
ATGCCACTCC CTGGCTGGAC AGAGTCACTT GAGGGCTGTC GGGAGGTGCT TGAAACGACG 
AAGTCGGTGG TCCGCAAGCG CGGGCTCGAC GCTGCGCTTG ACGAACTCGA CCCATCGGAG 
ACGCCGGCGG CGCGACACGG ACTCGATCTC GCGATCGCCG ACCGCCATGC TCGCGAGGCT 
GGGCAGTCGC TGGCGGCGTC TCTGGATCCG TCCCCAAGTC AGTCTGTCCC TGTCAACGCA 
ACCGTCGGGG ACGCGTCCCC CGAAGAAACG GCCGAACGGG CATCAGCCGC CATCGATGCG 
GGGTTCGAGA CGGTCAAGCT CAAGGTCGGT GCTCGCTCGA TCGGCGAGGA CGTTTCCCGC 
GTCCGGGCGG TCCGTGATGC GATCGGCCCG CAACCGGAAG TTCGCGTCGA CGCGAACGCT 
GCCTGGACGG TCGCTGATGC GCGCCGGGCG ATCGACGGTC TGGTACCCCT CGACGTCTCG 
TACATCGAAC AGCCGCTGGC CGCCGATGAT CTCGACGGTC ACGCGGCGTT GCGGGATCGC 
GGCGTCGAGA TCGCACTCGA CGAGTCGCTT CGGGACGTGG GTCTCGACGC GATTCTCGAC 
GCTGGGGCGG CGGATGTTCT CGTTTTGAAA CCGATGGCTG TGGGCGGGAT TCGACGGGCG 
CGGACGCTGG CACTCGAAGC GAGACAGCAA CATCTTGATC CGGTCGTCAC GACGACGGTT 
GATGGGGTTG TTGGGCGGAC GGCCGCACTC CATCTGGCGG CGAGTCTGCG GATCGAGCGG 
GCTTGCGGTC TCGCGACGGC CGACCGACTC GCGGACGATT TCGCACCCGA TCCTGCGCCG 
GTCAGCGAAG GCCGAATGGT GGTGCCCGAC GCCCTCGGAA TCGGCGTCGA TCCCAGTTTG 
CGCCGGTAA
 
Protein sequence
MEVDPVSLPL ASPLSTATGT IERREGFLVR LEDSPGIGEA MPLPGWTESL EGCREVLETT 
KSVVRKRGLD AALDELDPSE TPAARHGLDL AIADRHAREA GQSLAASLDP SPSQSVPVNA 
TVGDASPEET AERASAAIDA GFETVKLKVG ARSIGEDVSR VRAVRDAIGP QPEVRVDANA 
AWTVADARRA IDGLVPLDVS YIEQPLAADD LDGHAALRDR GVEIALDESL RDVGLDAILD 
AGAADVLVLK PMAVGGIRRA RTLALEARQQ HLDPVVTTTV DGVVGRTAAL HLAASLRIER 
ACGLATADRL ADDFAPDPAP VSEGRMVVPD ALGIGVDPSL RR