Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hoch_5042 |
Symbol | |
ID | 8547453 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Haliangium ochraceum DSM 14365 |
Kingdom | Bacteria |
Replicon accession | NC_013440 |
Strand | + |
Start bp | 6957393 |
End bp | 6958901 |
Gene Length | 1509 bp |
Protein Length | 502 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 646389718 |
Product | protein serine/threonine phosphatase |
Protein accession | YP_003269423 |
Protein GI | 262198214 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.384072 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCTCCCGC TCCCCAAGCT CATCGTCACC GTCGCGCTCT CGGTCGCCCT TGGCGTCGGA TTGATCATCT GGCAGGCCCA CTACCAGGCC AACCAGATCG CCGAGCAGGG CACCAAGGTG CTGCTCGACG TGCTCACGCG CGAGCAGCAC GCGCGCTGGC AACGGGAGAC CGTGCAGCTG GCCACCGCGC TCGGCGACGG CCGCGCCGAG CTCGCGCCCG GGCCCCGGCT GCGGCGTATC CTCGACCTGC CGTCCGAATT CAAGCACGCG CGCATCCTCG ACGCCGAGGG CGACGACCTC GCGGTCGCCC ACGCGTCCAT GGAGAGCTCG TTCACCGACA ACGAGCTCGA CAAGGACGCG CTGCTGGCCG CCTGGCGCGA GCGCGCCGAC CCCGAGCTGC CGCTGGCCGA GATCGAAGAC CCCGAAGATC AGCGCGTGTA CATGATCACC TCGCTGAGCG ACGCTGGCGA GGGCGCCTAT TTCGTCACCG GGTATTCGGG CGCACCGCTC GCCGCGATCG CCGCCGACCT CGAGCGCCAT CACCACACCG AGGCGCGCAC ATCGCTCGAG CTGCTGGTGT TGATCGGCAT CGGCGCCGAG TTGCTCGCCG TCATCGGTCT GTTCCTCATC CTGCGCCGCC GCGCCGAGCC CGACGACGCG ATTCCCCAGT TCGCGCCCGC GGCCACCGCG CGCTCGGGCC CGGCCCTGCA CGACATGGCC GGCGAGCTGG CCGTGCTGCT GCAGGAGACC GCGGCCAAGT CGCGTATGGA TAAGGATCTG GAGATCGTCC AGACCGTCCA GAATACGCTG CTGCCGGCCG ACGAGTTCGT CGAGCGCGGG CGCCTGTCCT TCGCCGGCAA GCTGCACTCG GCCGGCACCT GCGGCGGCGA CTGGTGGACC TACCACGACC TCGCCGACGG CACCGTGCTG CTGGTGCTCG GCGACGTCAC CGGCCACGGC CCCAGCGCCG CCATGCTGAC CGCGGCGGCC AAGGCGGCCT GCGACCTCGC CTGCGACATG CACGACCACC TCCCGAGCCC GGCCGCGGTG CTCAACCTGA TGAACCAGGC GGTGTTCCAC GCTGGCGGCC GGCGCCTGCT CATGACCTGC TTTGCCATCA TCATCGACCC GCGCACGGGC GCGGCGCAGT TCGCCAACGC CGGCCACAAC TTCCCCCTGC TGGCGCACCA GGAGCCCGGC CAGGACGAGG TGCAACTGAC CTCGCTGATC GCGCGCGGCA ACCGCCTCGG CGACTCGCGC GAGTCGCACT TCGAAATGGT CAGCGCCACC CTGGAGCCTG GTGATCGCCT GCTGCTGTAC ACCGACGGCA TCATCGAGTG CGAGAACTCG CAGGGCTCGG CCTACGGCGC GCGCCGCATG CGCGAGCTGA TCGCCGGCGC CGCGTCCGAG CCCGTCGCTC TGCGCGACGA GCTCATCCGC AGCGCGCTCG AGTTCGCCGA AGGCAAACTC GACGACGACC TCACCCTGGT CGCCGTGCGC TTCGCCTAG
|
Protein sequence | MLPLPKLIVT VALSVALGVG LIIWQAHYQA NQIAEQGTKV LLDVLTREQH ARWQRETVQL ATALGDGRAE LAPGPRLRRI LDLPSEFKHA RILDAEGDDL AVAHASMESS FTDNELDKDA LLAAWRERAD PELPLAEIED PEDQRVYMIT SLSDAGEGAY FVTGYSGAPL AAIAADLERH HHTEARTSLE LLVLIGIGAE LLAVIGLFLI LRRRAEPDDA IPQFAPAATA RSGPALHDMA GELAVLLQET AAKSRMDKDL EIVQTVQNTL LPADEFVERG RLSFAGKLHS AGTCGGDWWT YHDLADGTVL LVLGDVTGHG PSAAMLTAAA KAACDLACDM HDHLPSPAAV LNLMNQAVFH AGGRRLLMTC FAIIIDPRTG AAQFANAGHN FPLLAHQEPG QDEVQLTSLI ARGNRLGDSR ESHFEMVSAT LEPGDRLLLY TDGIIECENS QGSAYGARRM RELIAGAASE PVALRDELIR SALEFAEGKL DDDLTLVAVR FA
|
| |