| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_4069 |
|---|
| Symbol | |
|---|
| ID | 8546470 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | - |
|---|
| Start bp | 5590258 |
|---|
| End bp | 5591139 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 646388746 |
|---|
| Product | putative transcriptional regulator, Crp/Fnr family |
|---|
| Protein accession | YP_003268461 |
|---|
| Protein GI | 262197252 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.017048 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGACA GGCTCCGGGT TTCACGAGAA GAGCTGGACA GCATCCCGCT TCTGCGCGGT
TTCAGCGACG CCCAGATCGA GGCTGTCATC GCCTCCTTCC GTCCCATCGC GACGTCGGAC
GCAGGCGGGG ATGGGCTGCT GTTTGCCGAG GGCGACGCCG CGGACGGCTT CTATATTTTG
ACCAGCGGAG AGGTCATCCT CGAGCAGGAC GGCGTGGTGA TCCACCACCT GCGCCCGCTG
GCCGTCATCG GCGAGCTCGG CGCGCTGTGC GACCTGCCGC GTCACTGCAA CGCGCGCGTC
GCCGAGGACA CCGAGCTGTG GCGGCTCGAC GTCAAACGCC TCGAGGAGCT GTTCGCCGAG
GACAAAGATC TCGGGCTGCG CTTCCAGAAG AACCTGCTCG ACGTGGTCTC CGACAAGCTG
CAGCGCGACC AGGTGCGGAT GCGCGACATG CGCGCCAACA TCATTCACAC GCAGAAGGCG
ATGAAGCGGA TGCGCGACTT CCTGCTCGAG AGCTACGACA CCGCGGTGTC GAGCCCGCTG
CACGACGTCA TCGAGGATCT CATCCGCCGC AATCGCCGCG TCAACTACCG GGTGAGCCCG
ACCCAGGCGC TGGCCGCGAC GCTGCGCCTC GACGACGGGA CCGAGGCCGA TGTGGTGCAG
ATTTCGCGCA ACGATATCAC CGTGCAGGGC AGCGGCGGCA GCAAGGGCGA GCGCGTCTCG
GGCGTGCTCA TGCTCTCGGG TCCCGAGATC CCGGTGAGCG GCAAGATCGC CAGCGTCGCC
GAGGGCCGCG TCGAGATTCA GCTCGACCTG CTGCTCGACG AGTACGCGGC TAGCCTCGAG
GGCTACCTCA CCCGCATTCA GCTCGCCGAC TTCGTCGTCT GA
|
|---|
| Protein sequence | MTDRLRVSRE ELDSIPLLRG FSDAQIEAVI ASFRPIATSD AGGDGLLFAE GDAADGFYIL
TSGEVILEQD GVVIHHLRPL AVIGELGALC DLPRHCNARV AEDTELWRLD VKRLEELFAE
DKDLGLRFQK NLLDVVSDKL QRDQVRMRDM RANIIHTQKA MKRMRDFLLE SYDTAVSSPL
HDVIEDLIRR NRRVNYRVSP TQALAATLRL DDGTEADVVQ ISRNDITVQG SGGSKGERVS
GVLMLSGPEI PVSGKIASVA EGRVEIQLDL LLDEYAASLE GYLTRIQLAD FVV
|
|---|
| |