Gene Hoch_3311 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_3311 
Symbol 
ID8545699 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp4568853 
End bp4571081 
Gene Length2229 bp 
Protein Length742 aa 
Translation table11 
GC content77% 
IMG OID646387978 
ProductPDZ/DHR/GLGF domain protein 
Protein accessionYP_003267706 
Protein GI262196497 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0793] Periplasmic protease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.185586 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.436741 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCAAGC AGCGTACCCG CGAGCTCGTC CTCGCCTCGA TCGCGTTCCT GGCTGTGGGC 
GTCCTCGGCT ACTGGCTGCT CGAGACCCGT CCCAGCCCCC CCGAGCGTCC GCTGCTGTAC
GTGGCCGACG ACGGCGGCAT CGACACCGCG CGCGGCGCTG CCGGGACCGA GCGCACGCGC
GCGCGGCCGA GCGTGGATGT CGATCCCGAG CGCGCCCGGG TCAGCGGCGA GGTCCGCGAG
TTGCTGTCGG GGGAGGGCGT CGCCGGCGTG AGCGTGGTCT TCGTCCCCGC GGACGAAAAC
CAGGAGCTGA GCACCGAGAG CGACGAGCGC GGCCGCTACG CGATCGAGCT GCCGGCCGGT
CGCTATCGCG TGCGCGCGGT CGGCGAGCAG GTCGTGGCGC TGGACGGCGC GGCCTTTCCC
GGCGCGGGCG AGCCGAGCGC GGTCGCCGAG GGCGCCGGAC AGGGACAGGG ACAGGGCCAG
GGCCAGGGAC TGGAACTCGA GCGCGCCGCG CTCCTGGTCC AGGGCGGCAG CGCGGTCGAC
GACTTCGACA TCGCGGTCCT GCGGCTGGCG CAGGTGAGCG GACGCGTGGT CGACGGCCAG
GGCGAGCCGG TCGCCGGCGC GCTCGTGCGC CACCACACCG AGCTGCTCGA TCGCCGCTTC
ACCAGCGCCA GCACCGCGCC CGAGGGCGAG GCCGGCAGCG ATCGCGCGGG CGCCTTCACC
CTCCGCGTGC CGCCGGGCGC CGTCAGCCTG CACGCCAGCG CCGAGGGCCA CACGCCCTCG
TATACGCGCA TTCGCTGGGT CGCGCCCGGC GCCGAGCTCA GCGGCGTCGA GATCGTGATG
GACGCGGGCG CGAGCGTGAC CGGCCTGGTC GTCGGTCCCG ACGACGCGGC GGTGGCCGGG
GCCGCGATCA CGGCGCAACC CGGATCCGCG CTGGCCGACG CCCTGCGCAC CACCAGCGAC
GCGGACGGCG GCTTTCGCTT CACCGCGGTG CCGCCCGGGC AGGTGCGCAT CGAGGCCAGC
GCGCCCGGGC GCGGCTCGTC CATGCCGGCC ACGGTCACGG TGTCCGATAC CCCCGGGCTG
CGCGGCGAGC GCGTGGTCTT AGTGCTGAGC GCGCCGGTGG TAGCCGCCGG GCGGGTGCTC
GACGCCGAGG GCCGGGGGGT CTCGGGCGCC CGCGTGCGCG CGCTGGCGGC GCAGCGACCC
GAGCCGATCG CCGAGGAGCT GAGCGACAGC AACGGTCGCT TCCGGTTTCG CGCGCTGCCG
CGCGGTCCGC TCAGCTTCGC GGCCGCGGCC ACCGGGTTCG CATCCGGACA GGTGTCCGAG
GTCGCGCTGC CGGCCGAGCA CATCGAGATC CCGCTGGCGC GCAGCGGCGC CGTGCGCGGC
GTGGTCCGCG GCGACGGCGG CCCGCTCGGC CACTTCTACG TGCACGCGCT GCGCCGCGCC
ACCCTGGCCC GCGGCCCCGG CGTGCAGCCC GCGCCCGCGG GCGAGGACGC CTTCTGGGAG
CGCGGCGTGC GCATCGTGTC GCCCGACGGC GGCTATCGCA TCACCGGCCT GCCGCCCGGC
ACCTATACCG TACGCGCGTC CGCGCCCGGC CTGGCGCCGG CCGAGGAGAC CGGCATCATC
GTCGGTCCCG GCAACGAGGC CAGCGTCGAC TTCGCGCTCG CCGGCGGCGG CGCCATCGTC
GGCAGCGTGC GCAACGAGGC CACGGACGCG CCCATCAGCG GCGCCGCGGT CACGGTGTCG
ACCGGCAGCG GCGGCCAGAT GAGCTACACC GACGCGCGCG GCAGCTTCCG CATCCGCGAC
ATCGCGCCCG GGCGGCGCAG CCTCGAGGTC GTGCGTCCGG GCTTCATCGG CCGCGTGCGC
TCGGGCATCA CGGTCGGCGT GGGCGAGCCC GCGCGCGTGG ACCTGGCGCT CACGCCCGCG
GCCCTCGACG GCGGCGACGG CCCCTTCGAG ATCGCCGGCA TCGGCGCGGT GCTGGCCATC
GAGGGCGAGC GCCTCATGGT CCGCGAGCTG ATGCCGCACG CGCCCGCCGA GGTCGCCGGC
GTCGAGCCCG GCGAAGAGGT CTTTCTCATC GACACCCTGC GCACCCGCGG CATCTCGTTC
GAGACCGCGA TCGAGGCCAT CCGCGGCGTC GCCGGCACCT CGGTGCGCCT GGGGCTGCGC
CGCGGCGAGC GCGAGCGCTT CCTCGAGATC GTCCGCGCCG CGGTGCGGGT GAAACCCGCG
CCCGGCTGA
 
Protein sequence
MAKQRTRELV LASIAFLAVG VLGYWLLETR PSPPERPLLY VADDGGIDTA RGAAGTERTR 
ARPSVDVDPE RARVSGEVRE LLSGEGVAGV SVVFVPADEN QELSTESDER GRYAIELPAG
RYRVRAVGEQ VVALDGAAFP GAGEPSAVAE GAGQGQGQGQ GQGLELERAA LLVQGGSAVD
DFDIAVLRLA QVSGRVVDGQ GEPVAGALVR HHTELLDRRF TSASTAPEGE AGSDRAGAFT
LRVPPGAVSL HASAEGHTPS YTRIRWVAPG AELSGVEIVM DAGASVTGLV VGPDDAAVAG
AAITAQPGSA LADALRTTSD ADGGFRFTAV PPGQVRIEAS APGRGSSMPA TVTVSDTPGL
RGERVVLVLS APVVAAGRVL DAEGRGVSGA RVRALAAQRP EPIAEELSDS NGRFRFRALP
RGPLSFAAAA TGFASGQVSE VALPAEHIEI PLARSGAVRG VVRGDGGPLG HFYVHALRRA
TLARGPGVQP APAGEDAFWE RGVRIVSPDG GYRITGLPPG TYTVRASAPG LAPAEETGII
VGPGNEASVD FALAGGGAIV GSVRNEATDA PISGAAVTVS TGSGGQMSYT DARGSFRIRD
IAPGRRSLEV VRPGFIGRVR SGITVGVGEP ARVDLALTPA ALDGGDGPFE IAGIGAVLAI
EGERLMVREL MPHAPAEVAG VEPGEEVFLI DTLRTRGISF ETAIEAIRGV AGTSVRLGLR
RGERERFLEI VRAAVRVKPA PG