| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_1920 |
|---|
| Symbol | |
|---|
| ID | 8535078 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothiobacillus neapolitanus c2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013422 |
|---|
| Strand | - |
|---|
| Start bp | 2053422 |
|---|
| End bp | 2054339 |
|---|
| Gene Length | 918 bp |
|---|
| Protein Length | 305 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 646384301 |
|---|
| Product | aminodeoxychorismate lyase |
|---|
| Protein accession | YP_003263789 |
|---|
| Protein GI | 261856506 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase |
|---|
| TIGRFAM ID | [TIGR03461] aminodeoxychorismate lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.130955 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACACACT TTGCGCCCTT CACCCCGCAG GATCGCGGTC TGGCCTACGG CGATGGCTTG
TTTGAAACGA TGCGGCTATC CGGTGGCGGG GTCGCTTGGT GGCCCGAGCA TTTTGCCCGA
ATGAGTTACA CCTGTTGCGC GCTGGGCTTG CCGCTACCTG ATGAAATCGA CGTGCGCACT
GCCATTGATT CGGCGGTTGC GCAGAGCGGC AAGACACAGG CTGTGATAAA ACTCATGTAC
ACGGCAGGAT CGGGGCAGCG GGGCTATCTT CGGGCGGAAC CGGTCGAGCC CACACTGGCT
GTTTTGATCG GTGATGTGCC TGCGGCGGCT CCGGAATGGT CGATTCAGGG ATTAAGCGTT
GGTCTGCTCA AGCAATCCGG CGGTATCCCG ATACCTGCAC TCAGCGGACT CAAGCATCTC
AATCGTCTGC CTCAAGTGCT GGCGCGCGCG GCTTGGCCGG AGGGGGTCGA TGAGTGCCTG
ATCCATGACG AGAACGGTCT GATCTTGGGC GGAACGCAAA GCAATTTCTT CTGGCTGGAA
AATGGTCGCT GGTTTACGCC GCCGACTCAG GGTTCCGCCA TTGCCGGGAT AGTTCGTGCC
TTGTTGTGTC GTTACCTGGA TGTGACGATT GCACCCGTGT CCATCGGCCG CCTGGCTTTA
GCTCAGGCCG CTGCGCTCAG CAATTCCGTC CGGGGTGTGC TGCCGATCGG TCGCCTGGCG
GGGCGTGTGT TGTCTCTTGA TCAATCCAGG GATATGGAGG CGCGTTGGCA TCGCCTGTGT
GATATTCGGG CTGAAGACGG GGGTAAGCCT GTTGATTCGA CCTGGTTCGC TTTGCAGCGC
CAGATAGCGG TTCTTGATGG CGGCGGCCGG GCGCGTTGCC GGAAAATGTT TGATGAAATG
GCTGAATACT ATGAATAG
|
|---|
| Protein sequence | MTHFAPFTPQ DRGLAYGDGL FETMRLSGGG VAWWPEHFAR MSYTCCALGL PLPDEIDVRT
AIDSAVAQSG KTQAVIKLMY TAGSGQRGYL RAEPVEPTLA VLIGDVPAAA PEWSIQGLSV
GLLKQSGGIP IPALSGLKHL NRLPQVLARA AWPEGVDECL IHDENGLILG GTQSNFFWLE
NGRWFTPPTQ GSAIAGIVRA LLCRYLDVTI APVSIGRLAL AQAAALSNSV RGVLPIGRLA
GRVLSLDQSR DMEARWHRLC DIRAEDGGKP VDSTWFALQR QIAVLDGGGR ARCRKMFDEM
AEYYE
|
|---|
| |