Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hlac_1508 |
Symbol | |
ID | 7400336 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halorubrum lacusprofundi ATCC 49239 |
Kingdom | Archaea |
Replicon accession | NC_012029 |
Strand | + |
Start bp | 1521419 |
End bp | 1522324 |
Gene Length | 906 bp |
Protein Length | 301 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 643708570 |
Product | MscS Mechanosensitive ion channel |
Protein accession | YP_002566166 |
Protein GI | 222479929 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0668] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.0603757 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCTGGAG GGGTGGTAAC GACGACCAAC CCACTCGGCG CCTGGCCCGA CCTACTCGGC TATCCGGCGG CCCTCGTCGT CGGGCGGGCA CTGCTCGTCG TCGCCGTGTT CGGAGTGTTG TACGGATCGT ACTTCCTCTC CGTCCAGTTG TTAATGCGGT CCGAGAACAA GCGACGGGCG TACAACACGC GGAACGTGTT ACGGCTCGCG TTCGGGTTCG TGGGGACGGT CGCGACGCTC GCGGTGCTGA CGGAGAACTG GCTCGGGCTC CTCTTCTCGC TCGGAGTCAT CGGGTTCGCG ATCACCTTTG CACTCCAGCA GCCGCTGCTA TCGCTCATCG CGTGGGTGTA CATCACCGTT AAACAGCCGT ACGGCGTCGG CGACCGCGTC CGGATCGACG ACGCGAAAGG CGACGTGATC GGCGTCGACT TCCTCGTGAC GACGCTGTGG GAGATCAACG GCGAGCTGGT GACGACGAAC CAGCCGTCCG GACGGGTGGT GACGGTGCCG AACAGCGTCG TGCTCTCCTC GAACGTGGTC AACTTCGGCG GAGGTGGCTC CCCGTACGTG TGGAACGAAG TCGCCGTGCA GGTCGCTTAC GAGACTGATC TCGACTTCGC CCGGTCCGTG ATGGCCGAAG AAGCGACCGA CCTCCTTGGC GAGGACATGG CCGCGGGGAT CGCGGCGTAC CGCGAGGCGC TTGCCGAGAC GCCGGTGGAG CTCGAAGTGC ACGACGGGCC GACGGTGAAC GTGACGCAGG GCGAGTCGTG GGTGGAGCTC CGCGTCCGGT ACCTCACTCA TCCGCGTCGG GGGCAACGCG TCAAGAATCG GCTGTACGAG CGGATCCTCG CCCGGTTCAA CGAGAACCCC GACAGGGTGG CGTTCCCGGT GAGCCGGAGC CGGTAG
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Protein sequence | MAGGVVTTTN PLGAWPDLLG YPAALVVGRA LLVVAVFGVL YGSYFLSVQL LMRSENKRRA YNTRNVLRLA FGFVGTVATL AVLTENWLGL LFSLGVIGFA ITFALQQPLL SLIAWVYITV KQPYGVGDRV RIDDAKGDVI GVDFLVTTLW EINGELVTTN QPSGRVVTVP NSVVLSSNVV NFGGGGSPYV WNEVAVQVAY ETDLDFARSV MAEEATDLLG EDMAAGIAAY REALAETPVE LEVHDGPTVN VTQGESWVEL RVRYLTHPRR GQRVKNRLYE RILARFNENP DRVAFPVSRS R
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