| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_1089 |
|---|
| Symbol | |
|---|
| ID | 5732980 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | + |
|---|
| Start bp | 1245728 |
|---|
| End bp | 1246678 |
|---|
| Gene Length | 951 bp |
|---|
| Protein Length | 316 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641278227 |
|---|
| Product | polysaccharide deacetylase |
|---|
| Protein accession | YP_001543865 |
|---|
| Protein GI | 159897618 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.149078 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCGCATTA TTGGCTTATT GCTGGGCTTG TGCTGCTTGG TTGGTTGTGC ATCCGCTGCG
CCAAATCCCA CAGCTAGCCC AGCTGTGGCA ATTGCTACCC CAACGACTCT TAGCATAACC
GCAACGGCTC ATACTCCAAC TCCGATTAGC TTAACCGCTA CGCCGATGGC TTTGGCCTTG
ACGTGGCAAT CCTACACAGT TTATCGGGCT GAGGCTGGCG ATAGTTTGGA CTCAATTGCT
GAACGTGGGG CTAGCTTCCC CTTATTTATT AGCCGTTACA ATCGACTGAA TCGCCCAATT
GGGGCGGGCC AGTTGTTGAT TGTGCCACGT TTGGAAAGCG ATCAGCCGAA TAGTTTGCCC
TCAACTCCTA GGTTGATTAG CCGTGGGTTT ACCAGCCAAG CATGGGTTGG ACTAAGCTGT
GATCTACGTT CGGCAGCCGC ACCAATCGAA CCTCTATTAA AAACCCTTGC TAGCCAATCG
ATTACCATGA CTTTTTTTCT GGATGCCGCT TGGATTGAGC AAAACCCGCA GGCTTTGCAA
GAACTCGCTA CGGCTGACCA TGAACTGGCG AGTGGCGTGG CACTTGAGCA AATTGAGCCT
GAAATAGTAG CCCAAGCGTT GAATCAAACC GAAACTGCCT TGACCAACCA ACTTGGCATG
GATGCCTCGG TGCGCCCCTA TTTGCGAATT TGGCAGCAAC CGAGTAGCCA AGCCTTGGCT
GAACTTGCCG CCCAAAACGG CTATTTGCTG CTCGATAACG CCCAAGAACG CGATGCATTG
GCATTGACTG AGGATGTAAT TCAGCCTGAG CAAGCGGCGA CGTATCGTGG GGAATTGCTT
GTGCTTGATT GTGCTGACCC TGCGCTGGCC GAAGCCTTGC CGTTAATCAT TGAGCGCTTG
CAGCAAGCTG GTTTGCAGCT GCGCAGTATT GCGGAAGTGA TGCAGCCATG A
|
|---|
| Protein sequence | MRIIGLLLGL CCLVGCASAA PNPTASPAVA IATPTTLSIT ATAHTPTPIS LTATPMALAL
TWQSYTVYRA EAGDSLDSIA ERGASFPLFI SRYNRLNRPI GAGQLLIVPR LESDQPNSLP
STPRLISRGF TSQAWVGLSC DLRSAAAPIE PLLKTLASQS ITMTFFLDAA WIEQNPQALQ
ELATADHELA SGVALEQIEP EIVAQALNQT ETALTNQLGM DASVRPYLRI WQQPSSQALA
ELAAQNGYLL LDNAQERDAL ALTEDVIQPE QAATYRGELL VLDCADPALA EALPLIIERL
QQAGLQLRSI AEVMQP
|
|---|
| |