| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HY04AAS1_1064 |
|---|
| Symbol | |
|---|
| ID | 6743879 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Hydrogenobaculum sp. Y04AAS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011126 |
|---|
| Strand | - |
|---|
| Start bp | 992254 |
|---|
| End bp | 992997 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 642750872 |
|---|
| Product | tRNA pseudouridine synthase A |
|---|
| Protein accession | YP_002121728 |
|---|
| Protein GI | 195953438 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0101] Pseudouridylate synthase |
|---|
| TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.000223537 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAGAACT ATAAATTTAC TATATCCTTT GTAGGCACAA ATTACAGCGG ATGGCAATAC
CAACCAAACG TACCTACCAT ACAAAACGAA GTAGAAGAAA AACTGTATTA CATAGTAAAT
AAGAAAAAAC CTATAAAGCA AAAAATAAGG GCTATAGGTT GTTCTAGGAC AGACAAAGGC
GTTCATGCTA TTGAGTTTGT ATTCAACGTC AAGATGGAAT TTGATAAAGA TTTAAATTTT
TTAAGGAAAG CCCTAAATAG CGCTCTACCA AAGGATATAA AAATCCACAA CATAGAAGAG
GTGCCTTTGG AGTTTAACTC CCGTTTTGAT GCTTTAAAAA AAACCTATAT ATATAAACTG
TTTTTTGATG AGAAAAACTC ACCGTTTTTC CAGGATAGGG CAATGCTTGT GTATAAGCCT
ACAGATTTAG GCAAAATGAT GGAAATATCG CACTTATTTT TAGGTTATAA GGATTTTAGG
GGATTTACCA AAGAGCTTGA AGACGAAAAC GGCTATTGCT CTGTAGAAAA TATAACTTTT
AAAGTGGATT ACCCTTTGGT AGAAATATCA ATTACTGCCA ATAGATTTTT GAGGTATATG
GTAAGGCGTA TGGTAGGGAC GATGTTATCT TACGCTCAAG GGCTTATATC AATAGACGAT
GTAAATGATT TTTTAAAAGC AAAGAGAGTT TCAAACCACA CGGCAAAAGC TCATGGTTTA
TACTTAAAAA AGGTATATTA CTGA
|
|---|
| Protein sequence | MKNYKFTISF VGTNYSGWQY QPNVPTIQNE VEEKLYYIVN KKKPIKQKIR AIGCSRTDKG
VHAIEFVFNV KMEFDKDLNF LRKALNSALP KDIKIHNIEE VPLEFNSRFD ALKKTYIYKL
FFDEKNSPFF QDRAMLVYKP TDLGKMMEIS HLFLGYKDFR GFTKELEDEN GYCSVENITF
KVDYPLVEIS ITANRFLRYM VRRMVGTMLS YAQGLISIDD VNDFLKAKRV SNHTAKAHGL
YLKKVYY
|
|---|
| |