Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_1154 |
Symbol | |
ID | 8708778 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 1338849 |
End bp | 1343435 |
Gene Length | 4587 bp |
Protein Length | 1528 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 646483245 |
Product | hypothetical protein |
Protein accession | YP_003374353 |
Protein GI | 283783599 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.193707 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGAGG ATACTGCATT ACAAGCATTA TTTGACGGTA CGTTACGCAA TTCTTCTGGC AATGTGACTA ATGCGTTGCT TGTGTATGGT GCGCCGAATA CTGGTAAAAC GCAGTTTGCT GTGCGCGCAG CAATTTCCGG CTATAAGCGT TGGTCGCATA ATGTTACTGC AATGGCTGTG CAAAATCGTG TTCTTGCTTC AAAAATTGAC AATATTATTA TTCGCCAAAT TGGTGTAAGT AAGCAGTCTC GTCCAGTTGG CACTTTGGCT TCTTTGGCTT TTACTATCAT TTCTGCTTGC TGTAAGTTAA AGAATAATCC TTCGCCTAAG CTGCTAAATG GTGCTGAGCA GGATTCTTTG CTTCGTAAAG TTTTGCGCGC ACACATTGAG CATGTTATGC GTGGAGATAA TGGTGATTGC AATATATGCG CGCTTTTTAA GGATTATTTT GAAACGTCTC AATGGGTTGT TCCATTAACT TGCGCAGTTT CCGCCGCTTC AGTGCCTTCT GCGCCTTCCG CGACTCCGGT TGCTCAATCA ACTTCTTCTT CTCCAGAATT TTTGGCAGAT AGATTCGATA TTAACAACGC TTTTATGCAT CAATTGCGCG ATATGCTCGC TCGTTTAGAT GAGCTTGGTA TTAGCGATTT TGAAAGCGAA AATTCAGTTC TTCGCGCTCT TAGTGACGAG CAATCTTACG CCAATAATAG TGATATTTTA CAAACGTCTG TGCTTATTAA ACGTAGATTA ACTCAATGGC GTTTGGCGTT TGCTTTGCGT GCTGAATATC GAAAAATAAT TGCCGACACT TATAAGTCTT CTTTCCGACT TGACGCTTCG CAACTGTTGG TTGAGGGTGC AAAATCTGCG CGCGAATTAG GAGAGCATGG TTTAGTAAAT TCTTCTGAAA TTCCAGCTCT TCTTGTAGTC GATGATTATC AAGATATTAC TTTGGCTGGT TTGAGTTTTA TTGAGACTTT GTCGAAGATT GGCACGCGTT TAGTTTTGCT TGCGAATCCG GATGAATCTG TGCAATCGTT TAGAGGAGCG TACCCGGATT ATGCAATTTC TGCAGCTTTG GATGAGTTGA ATGCTGCTGA GCAAACTTTA GAATATACGG GTCTTGCTGA TTCTTGCGAA AATTCTTCCG ACGATTCTGC CGATTCTTCT AAAAATTATT CTGCAGATCC AACTTTTGCA AATTATACCC AAGCACCTTC GATGCGTGAA TTGCTCGCTT CACGCGTTTC TCTTTCGCTT ACTTCGCAAT ATAAAACAGA TGTTGCGCTC CCAAATCGCC CTTGGAAAAT GCCAAAATTT GTAGGCTCCT TACCGATTGA GCCTATAGAA ACCCTCCAAA ATTCTCATCT CAACTCAGAC GACACTGTTT TTACAGCGTT ATATCGTTCA CAGCGCGAGG AATTAGATGC TGTTATTTGG CAAATGAAGC AATCTCACGT AAATAATAAG CGCAAGTGGA GCGATATGGC GTTAATTGCG CACGACAATT CTACTGTTCG TCTTTTTGGC GAGCAGCTTC GCGCTTCTGG GGTTCCTGTG CGATACTCGT CAGTGACTCG CCCATTAAAA GATGAGCCGT TTGTGCAAGG TTTATTTGCG CTTATTGAAC TTGCTCAATT TGCGCAGCAC GGTTTTTCTG GAATTGTTGA GCAAGTAAAA CATGGTAGAA GTTTGCAAAA TTTGGCTTCG TGGGTGCGTT TGCGAGTTCA GAATATTATG GATAGTCCGC TTTCCGCGAT TACTAAAAGT GATTCTGGAT TTTACGGTGA TTTAGACGTT GAAATACCTG CGAAGTTATA TTCTGTAGAT TTGCTTATGC GTTCTCTTTC TTCTCTTTCG GCTGTTTTAA TTGAGCAAAA TGGTGAAAAG AACAAGAACT TTGAATCTAA TGCTCCTTTG CGAAATCTTG TTCATAACTG GGATTTGTTG CAAAATTCGC TTCATGATGC GCAAAGCAAG GCGTACGTTG AATCTCAAAT TTTGGTTGAT AATAGTCGTA TTGATGGCAG TTCAAATGAT CTTATGCCAT TATCTCTCGA TGCGTGCTAT TTGCTTTGTG TAGCAGATGT TGCACGTTCT ATAGATGATG ATTCTACAGT GTTGCAAATA TTGCAGAATA TGGCTCCTCG AAATCCGCAC GTTGCAGCTT TTGTAAAACT GTGGAAAAAC GTGCAAATTC TCGCTTCTCG TATGCGCAAT AATCCTGATT TGAGTAATGC TCAATACGCT CTTGGTGAGG CTTGGAATAT TTGTCATGTT GCTGAGCGTT GGCAGCGTAT GTCTTTACAG CATAATTCGG AAGGTTATCG AGCCAACGAT CGCTTGGATG CTGCAATGCG TCTTTTTGAT TATGTTTCTT CATATGTTTC TTCTGATATT TCTTCAATGA ATACGTTTGA CGATACTTTT AGACAAGAAA ATGTTGTAAG TATTGCAGAT TTTATAGCTC AAGTTCGTGG CATGGAAATT GAAGCTGATT CTCTTGCTAA AGTAGCACCT GTTCCAGATG CTGTAACGCT TACTACTCCT GCTGGTTCTG TTGGAAAACA TTGGAATCTT GTGTGGATGC CTACTTTGCA ACAACGTGTG TGGCCAAATC TTGCTTCTCG TAGCACTATG TTTGGCGCAG AAAGTTTAGC GAATATTATT TTGCATTCTA AGATTTCTGC TTCTAAATTG ACTGTGAATG CGTCACTTCT TTCGAATAAT GATAAATCTG CAGTTTTTGC TTCGGAACAG CGCAGTTTTT TGTTAGCTAT TACGCGCGCA ACAGAGCGTT TGTATATAAG CGCGCAATAT AGCGATAGTG CTGTGCCAAG CGACTTTCTT TATTATTATT TGCCTGAAAG ATACTACAAT AATGAAAATT CGCGCACGCC TTTTACGGAA TTTACTACAC CTTTTGCCGG TTTAGATATG GATGCTCGTG GACTAGTGTG TGCTGCTCGT TCGCAAATTT TGCGTGCTTC TTCTATGAAA GAAGAGTTTG GAAATAGTGT AGGTAATGCA GATAGTGCAG ATAGTGCAAG TAGTTCCGAT ATTGCAAATA GTTCCAATAG TGAGAATAGT AAGTCTAGAA ATGCGATTAT TGACGCTGCT CAAACGTTGC AATTACTTAA AGAAAATGGA ATATTTTGCG CTGATCCTTT TGAGTGGGAT TTTATGAGCG ATGTCGATGA CTATGTTGAT AAAAAATCTT CTGTTGAAAA AGACAATGAA AAAAACAATG AAAAAGCTGG CTCTGCTAAA AAAGCTAGTT CTGTTGTAAG CTTGTCTCCT TCAGCTGTAG ATAGTTTGTG GGCATGCCCT GTGTGCGGAT TGCTAAATCG TCAGCTTTTA GGTCCTCAAC CCGGCAGTGC AGCAACGTAT TTTGGCACGC TCATTCACGA AACTGCAAGA TGGGCAAGCG AAAATCAGCA TTACGATATG CCAGAAACTG AAGTTGATGA AACTGAAACA GCGAATAATT CAGCCGACTA TTCTCCCTAC TCTCCGCTTG TGCGCCGCAG TAACGCAATC GCAAATCTTA TGGAAAAGTA TTACCTAAGT ATTGCGCCTG AACTTGCAGA TATTCGAGAT AGTAAGGAGC ATTATTCGGC TCTTGCGCGT GAGAAGAATA TTAAACGTGC GTTACATGCA ATTGCGCAAT ATTTTGTCAC TTCTTACGAT CAATCAACAT ATGCGCTTAA CTCAAAAAAG TCAGAAAACG GCATATTAGA ATCTCTTACA AAAAGCGAAA AATCTTTAGA AAGTAGCATA GGTAGATTGC AACAAGCGTA TTGCGAATTG CAAACAAGCG CGCATTTTGG ATTTAATGAT ATTGCTCGCG TATTGAACAA TACTTTTAAG AATGCAAATT TGCAAACCGT TACTACGCAT GATTGCTACG AATTGATGGG TGCTTTAGTT GGAGGATGGC CGGATGGCGC AAGTGAAGAT ATGCAAGTAC ATATTCACGG TCGAATTGAT CGCATGGAAA AGCGCATTAA TTCAGATGGT TCCGAGCATA TTCGCTTACT GGACTATAAA ACAGGAAAGC CTTTAACAGC AAGCGGAGTT TTTAACGATT TGCAGCTAGT TTGCTACCAG CTTGCTTTAC TTTTTTCTGA TGAGAAACCT CTTATTGATG CGTCGAATGC GCCGATTATT TCGCGAAGTA TTCTATTTCA CGTTGCTAAG AACGATTATC CTGCTCAAGA TCATAACGTT GCTGAAAACG TGTATCAGCC GCCGCTTTGC GTAAAAAATG CTTTAAATAA TAATCCGCTT GAGTTACGAG TTGGATTCAA AAATATGGCA AGATTGTTAG ATTGTCCGCA TCTTGACGAT ATTGCGAAGA ATTGTCCAGA AAATGTAAGC GAAAGCGCTT GGCAGTCGTT TACATCATTA AACCAAAGTG CAAAATGGTC TCTTACTATG ATTTCGCGCG TTTGCTATGC TGCTGCGGCA GTTCGTTCGC ATAAGATTAT TGCGCACCCA ACTTCTGAAC ACTTAAAGTA TTGCAACGGA AAACAAGTAT GCCCAGCATG CGCAGGTTGT ATAGACACTG TATATGAGGT GTTGTAG
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Protein sequence | MSEDTALQAL FDGTLRNSSG NVTNALLVYG APNTGKTQFA VRAAISGYKR WSHNVTAMAV QNRVLASKID NIIIRQIGVS KQSRPVGTLA SLAFTIISAC CKLKNNPSPK LLNGAEQDSL LRKVLRAHIE HVMRGDNGDC NICALFKDYF ETSQWVVPLT CAVSAASVPS APSATPVAQS TSSSPEFLAD RFDINNAFMH QLRDMLARLD ELGISDFESE NSVLRALSDE QSYANNSDIL QTSVLIKRRL TQWRLAFALR AEYRKIIADT YKSSFRLDAS QLLVEGAKSA RELGEHGLVN SSEIPALLVV DDYQDITLAG LSFIETLSKI GTRLVLLANP DESVQSFRGA YPDYAISAAL DELNAAEQTL EYTGLADSCE NSSDDSADSS KNYSADPTFA NYTQAPSMRE LLASRVSLSL TSQYKTDVAL PNRPWKMPKF VGSLPIEPIE TLQNSHLNSD DTVFTALYRS QREELDAVIW QMKQSHVNNK RKWSDMALIA HDNSTVRLFG EQLRASGVPV RYSSVTRPLK DEPFVQGLFA LIELAQFAQH GFSGIVEQVK HGRSLQNLAS WVRLRVQNIM DSPLSAITKS DSGFYGDLDV EIPAKLYSVD LLMRSLSSLS AVLIEQNGEK NKNFESNAPL RNLVHNWDLL QNSLHDAQSK AYVESQILVD NSRIDGSSND LMPLSLDACY LLCVADVARS IDDDSTVLQI LQNMAPRNPH VAAFVKLWKN VQILASRMRN NPDLSNAQYA LGEAWNICHV AERWQRMSLQ HNSEGYRAND RLDAAMRLFD YVSSYVSSDI SSMNTFDDTF RQENVVSIAD FIAQVRGMEI EADSLAKVAP VPDAVTLTTP AGSVGKHWNL VWMPTLQQRV WPNLASRSTM FGAESLANII LHSKISASKL TVNASLLSNN DKSAVFASEQ RSFLLAITRA TERLYISAQY SDSAVPSDFL YYYLPERYYN NENSRTPFTE FTTPFAGLDM DARGLVCAAR SQILRASSMK EEFGNSVGNA DSADSASSSD IANSSNSENS KSRNAIIDAA QTLQLLKENG IFCADPFEWD FMSDVDDYVD KKSSVEKDNE KNNEKAGSAK KASSVVSLSP SAVDSLWACP VCGLLNRQLL GPQPGSAATY FGTLIHETAR WASENQHYDM PETEVDETET ANNSADYSPY SPLVRRSNAI ANLMEKYYLS IAPELADIRD SKEHYSALAR EKNIKRALHA IAQYFVTSYD QSTYALNSKK SENGILESLT KSEKSLESSI GRLQQAYCEL QTSAHFGFND IARVLNNTFK NANLQTVTTH DCYELMGALV GGWPDGASED MQVHIHGRID RMEKRINSDG SEHIRLLDYK TGKPLTASGV FNDLQLVCYQ LALLFSDEKP LIDASNAPII SRSILFHVAK NDYPAQDHNV AENVYQPPLC VKNALNNNPL ELRVGFKNMA RLLDCPHLDD IAKNCPENVS ESAWQSFTSL NQSAKWSLTM ISRVCYAAAA VRSHKIIAHP TSEHLKYCNG KQVCPACAGC IDTVYEVL
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